STRINGSTRING
AMB84976.1 AMB84976.1 AMB83871.1 AMB83871.1 AMB83928.1 AMB83928.1 AMB83994.1 AMB83994.1 AMB88200.1 AMB88200.1 AMB84233.1 AMB84233.1 hmgA hmgA AWM79_03545 AWM79_03545 AMB84722.1 AMB84722.1 AMB84851.1 AMB84851.1 AMB85081.1 AMB85081.1 AMB85094.1 AMB85094.1 AMB85095.1 AMB85095.1 mtnD mtnD AMB85417.1 AMB85417.1 AMB85698.1 AMB85698.1 ppnP ppnP AMB86531.1 AMB86531.1 AMB86544.1 AMB86544.1 AMB86588.1 AMB86588.1 AMB86648.1 AMB86648.1 AMB86752.1 AMB86752.1 AMB87015.1 AMB87015.1 AMB87291.1 AMB87291.1 AMB87494.1 AMB87494.1 cpsB cpsB AMB87977.1 AMB87977.1 nbaC nbaC AMB88405.1 AMB88405.1 AMB88162.1 AMB88162.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMB84976.15-deoxy-glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
AMB83871.1Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
AMB83928.1Cyclic AMP receptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
AMB83994.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
AMB88200.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
AMB84233.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
hmgAHomogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. (432 aa)
AWM79_03545Toxin; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family. (483 aa)
AMB84722.1Cysteine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
AMB84851.1Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (232 aa)
AMB85081.1Ethanolamine ammonia lyase-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
AMB85094.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
AMB85095.1Gentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
mtnDAcireductone dioxygenase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. (181 aa)
AMB85417.1Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
AMB85698.1Transcriptional regulator; Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
ppnPHypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (93 aa)
AMB86531.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
AMB86544.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
AMB86588.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
AMB86648.1Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
AMB86752.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
AMB87015.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
AMB87291.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
AMB87494.1Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
cpsBMannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family. (482 aa)
AMB87977.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
nbaC3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate. (184 aa)
AMB88405.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
AMB88162.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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