(120 nodes) Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC), and Translation elongation factor activity network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000559	Ribosomal protein L13. (211 aa)
	ENSNMLP00000000561	Ribosomal protein S21. (82 aa)
	ENSNMLP00000000639	annotation not available (112 aa)
	ENSNMLP00000000678	Ribosomal protein L11. (182 aa)
	ENSNMLP00000000919	annotation not available (156 aa)
	ENSNMLP00000001024	Ribosomal protein L7-like 1. (251 aa)
	ENSNMLP00000001079	Ribosomal protein S27a. (156 aa)
	ENSNMLP00000001430	Ribosomal protein, large P2, like. (117 aa)
	ENSNMLP00000001681	annotation not available (73 aa)
	ENSNMLP00000002612	Ribosomal protein L13a. (211 aa)
	ENSNMLP00000002651	Ribosomal protein L30. (185 aa)
	ENSNMLP00000003044	Ribosomal protein L13a. (211 aa)
	RPL5	Ribosomal protein L5. (316 aa)
	ENSNMLP00000004725	Ribosomal protein S16. (146 aa)
	ENSNMLP00000004945	Ribosomal protein, large, P1. (114 aa)
	ENSNMLP00000005152	annotation not available (100 aa)
	ENSNMLP00000005255	Ribosomal protein L35a. (110 aa)
	ENSNMLP00000006397	annotation not available (115 aa)
	ENSNMLP00000006416	annotation not available (243 aa)
	ENSNMLP00000006481	Ribosomal protein L14. (137 aa)
	ENSNMLP00000006869	Ribosomal protein L22. (142 aa)
	ENSNMLP00000007103	annotation not available (78 aa)
	ENSNMLP00000007518	Eukaryotic translation elongation factor 1 beta 2. (209 aa)
	ENSNMLP00000007557	annotation not available (128 aa)
	ENSNMLP00000007928	Ribosomal protein L8. (257 aa)
	ENSNMLP00000008284	Ribosomal protein S15. (145 aa)
	ENSNMLP00000008297	Ribosomal protein L39. (56 aa)
	ENSNMLP00000008898	SIL1 nucleotide exchange factor. (449 aa)
	ENSNMLP00000010512	Ribosomal protein S28. (99 aa)
	ENSNMLP00000010642	Ribosomal protein L13. (211 aa)
	ENSNMLP00000010785	Ribosomal protein L10. (232 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	ENSNMLP00000012327	Ribosomal protein L6. (258 aa)
	ENSNMLP00000012512	annotation not available (855 aa)
	ENSNMLP00000012554	Ribosomal protein S9. (194 aa)
	ENSNMLP00000013150	Ribosomal protein S10. (172 aa)
	ENSNMLP00000013238	Ribosomal protein L27. (140 aa)
	ENSNMLP00000013262	Interferon-induced protein 35. (371 aa)
	ENSNMLP00000013825	Ribosomal protein L4. (402 aa)
	ENSNMLP00000014307	Ribosomal protein S14. (151 aa)
	ENSNMLP00000014583	Ribosomal protein S6. (245 aa)
	ENSNMLP00000015565	Ribosomal protein, large P2. (119 aa)
	ENSNMLP00000015746	Ribosomal protein L36. (105 aa)
	ENSNMLP00000015848	Ribosomal protein L34. (114 aa)
	ENSNMLP00000015942	Ribosomal protein L22-like 1. (131 aa)
	ENSNMLP00000016925	Ribosomal protein L23a. (163 aa)
	ENSNMLP00000017836	Ribosomal protein L26. (145 aa)
	ENSNMLP00000018393	Ribosomal protein L21. (150 aa)
	ENSNMLP00000018811	Ribosomal protein L35. (123 aa)
	ENSNMLP00000019834	Ribosomal protein S19. (167 aa)
	ENSNMLP00000020062	Ribosomal protein L18. (188 aa)
	ENSNMLP00000020193	Eukaryotic translation elongation factor 2b. (431 aa)
	ENSNMLP00000021079	Ribosomal protein L15. (204 aa)
	RPS8	Ribosomal protein S8. (189 aa)
	RPL3L	Ribosomal protein L3 like. (372 aa)
	ENSNMLP00000021929	Ribosomal protein S2. (277 aa)
	ENSNMLP00000022208	Ribosomal protein L36A. (119 aa)
	ENSNMLP00000022352	SERPINE1 mRNA binding protein 1a. (398 aa)
	ENSNMLP00000022498	annotation not available (194 aa)
	RPL19	Ribosomal protein L19. (197 aa)
	ENSNMLP00000023225	Ribosomal protein S17. (150 aa)
	ENSNMLP00000023626	annotation not available (95 aa)
	ENSNMLP00000023723	Ribosomal protein S4 X-linked. (265 aa)
	ENSNMLP00000023863	Mitochondrial ribosomal protein S2. (262 aa)
	ENSNMLP00000024433	annotation not available (196 aa)
	ENSNMLP00000024833	Radical S-adenosyl methionine domain containing 1. (446 aa)
	ENSNMLP00000024986	annotation not available (335 aa)
	ENSNMLP00000025032	Ribosomal protein S23. (146 aa)
	RPL27A	Ribosomal protein L27a. (148 aa)
	ENSNMLP00000025351	annotation not available (104 aa)
	ENSNMLP00000025912	FAU ubiquitin like and ribosomal protein S30 fusion a. (133 aa)
	RPS29	Ribosomal protein S29. (58 aa)
	ENSNMLP00000026141	annotation not available (78 aa)
	ENSNMLP00000026142	annotation not available (148 aa)
	ENSNMLP00000026289	Ribosomal protein S18. (152 aa)
	ENSNMLP00000026588	Tumor protein, translationally-controlled 1. (231 aa)
	ENSNMLP00000027483	WD repeat domain 31. (345 aa)
	ENSNMLP00000027550	Ribosomal protein L31. (151 aa)
	ENSNMLP00000028232	FA complementation group E. (507 aa)
	ENSNMLP00000028366	Dedicator of cytokinesis 4b. (1967 aa)
	ENSNMLP00000028472	Mitochondrial translational initiation factor 2. (673 aa)
	RPL5-2	Ribosomal protein L5. (298 aa)
	ENSNMLP00000030008	Ribosomal protein L29. (67 aa)
	ENSNMLP00000030370	annotation not available (208 aa)
	ENSNMLP00000030373	annotation not available (210 aa)
	ENSNMLP00000030934	SERPINE1 mRNA binding protein 1b. (405 aa)
	ENSNMLP00000031986	Ribosomal protein S25. (128 aa)
	ENSNMLP00000032105	Ribosomal protein L24. (148 aa)
	ENSNMLP00000032527	Ribosomal protein S12. (132 aa)
	ENSNMLP00000032597	Ribosomal protein L7. (235 aa)
	ENSNMLP00000033124	Ribosomal protein S13. (140 aa)
	ENSNMLP00000033359	Ribosomal protein L37. (76 aa)
	ENSNMLP00000033397	Ribosomal protein L28. (168 aa)
	ENSNMLP00000033473	Ribosomal protein, large, P0. (323 aa)
	ENSNMLP00000033613	annotation not available (284 aa)
	ENSNMLP00000034018	ADP-ribosylation factor-like 6 interacting protein 1. (164 aa)
	ENSNMLP00000034128	annotation not available (92 aa)
	ENSNMLP00000034239	Ribosomal protein L38. (144 aa)
	ENSNMLP00000034273	Ribosomal protein L32. (135 aa)
	RPL7A	Ribosomal protein L7a. (249 aa)
	ENSNMLP00000034721	Mitochondrial ribosomal protein S5. (388 aa)
	ENSNMLP00000034946	Ribosomal protein S7. (237 aa)
	ENSNMLP00000035205	Zgc:171772. (92 aa)
	EEF1A1-2	Eukaryotic translation elongation factor 1 alpha 1. (502 aa)
	ENSNMLP00000036246	Ribosomal protein SA. (301 aa)
	ENSNMLP00000036894	Ribosomal protein S26. (115 aa)
	ENSNMLP00000037051	Coiled-coil domain containing 105. (415 aa)
	ENSNMLP00000038024	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein). (433 aa)
	ENSNMLP00000039376	Ribosomal protein L17. (184 aa)
	ENSNMLP00000039530	Ribosomal protein L3. (406 aa)
	RPL19-2	Ribosomal protein L19. (196 aa)
	ENSNMLP00000039983	Ribosomal protein L9. (192 aa)
	ENSNMLP00000040231	Ribosomal protein S24. (184 aa)
	ENSNMLP00000040375	Ribosomal protein L12. (165 aa)
	ENSNMLP00000041072	annotation not available (121 aa)
	ENSNMLP00000041073	Si:dkey-159f12.2. (161 aa)
	ENSNMLP00000041638	Ribosomal protein L18a. (176 aa)
	ENSNMLP00000042272	Receptor for activated C kinase 1. (298 aa)
	ENSNMLP00000043943	Ribosomal protein S3A. (266 aa)
	ENSNMLP00000044910	Ribosomal protein S5. (204 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1A1-2	ENSNMLP00000000559	ENSNMLP00000035843	ENSNMLP00000000559	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L13.	0.867
EEF1A1-2	ENSNMLP00000000561	ENSNMLP00000035843	ENSNMLP00000000561	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein S21.	0.787
EEF1A1-2	ENSNMLP00000000639	ENSNMLP00000035843	ENSNMLP00000000639	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.733
EEF1A1-2	ENSNMLP00000000678	ENSNMLP00000035843	ENSNMLP00000000678	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L11.	0.888
EEF1A1-2	ENSNMLP00000000919	ENSNMLP00000035843	ENSNMLP00000000919	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.860
EEF1A1-2	ENSNMLP00000001024	ENSNMLP00000035843	ENSNMLP00000001024	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L7-like 1.	0.861
EEF1A1-2	ENSNMLP00000001079	ENSNMLP00000035843	ENSNMLP00000001079	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein S27a.	0.881
EEF1A1-2	ENSNMLP00000001430	ENSNMLP00000035843	ENSNMLP00000001430	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein, large P2, like.	0.435
EEF1A1-2	ENSNMLP00000001681	ENSNMLP00000035843	ENSNMLP00000001681	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.677
EEF1A1-2	ENSNMLP00000002612	ENSNMLP00000035843	ENSNMLP00000002612	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L13a.	0.697
EEF1A1-2	ENSNMLP00000002651	ENSNMLP00000035843	ENSNMLP00000002651	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L30.	0.895
EEF1A1-2	ENSNMLP00000003044	ENSNMLP00000035843	ENSNMLP00000003044	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L13a.	0.697
EEF1A1-2	ENSNMLP00000004725	ENSNMLP00000035843	ENSNMLP00000004725	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein S16.	0.879
EEF1A1-2	ENSNMLP00000004945	ENSNMLP00000035843	ENSNMLP00000004945	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein, large, P1.	0.928
EEF1A1-2	ENSNMLP00000005152	ENSNMLP00000035843	ENSNMLP00000005152	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.822
EEF1A1-2	ENSNMLP00000005255	ENSNMLP00000035843	ENSNMLP00000005255	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L35a.	0.833
EEF1A1-2	ENSNMLP00000006397	ENSNMLP00000035843	ENSNMLP00000006397	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.655
EEF1A1-2	ENSNMLP00000006416	ENSNMLP00000035843	ENSNMLP00000006416	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.913
EEF1A1-2	ENSNMLP00000006481	ENSNMLP00000035843	ENSNMLP00000006481	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L14.	0.835
EEF1A1-2	ENSNMLP00000006869	ENSNMLP00000035843	ENSNMLP00000006869	Eukaryotic translation elongation factor 1 alpha 1.	Ribosomal protein L22.	0.606