(116 nodes) Mitochondrial translation, and threonine-tRNA ligase activity network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000352	annotation not available (203 aa)
	ENSNMLP00000000443	Mitochondrial ribosomal protein L36. (112 aa)
	ENSNMLP00000000565	Ribosomal protein L23. (140 aa)
	ENSNMLP00000000683	Cytochrome c oxidase assembly factor COX18. (356 aa)
	ENSNMLP00000000767	Mitochondrial ribosomal protein L9. (295 aa)
	ENSNMLP00000000781	Mitochondrial ribosomal protein L24. (216 aa)
	ENSNMLP00000000954	Mitochondrial ribosomal protein L53. (108 aa)
	ENSNMLP00000001294	Mitochondrial ribosomal protein S35. (354 aa)
	ENSNMLP00000002012	Era-like 12S mitochondrial rRNA chaperone 1. (403 aa)
	ENSNMLP00000002192	Mitochondrial ribosomal protein L47. (257 aa)
	ENSNMLP00000003271	Mitochondrial ribosomal protein L14. (155 aa)
	ENSNMLP00000003824	Mitochondrial ribosomal protein L28. (251 aa)
	ENSNMLP00000003836	annotation not available (291 aa)
	ENSNMLP00000004363	Mitochondrial ribosomal protein L20. (149 aa)
	ENSNMLP00000005223	Mitochondrial ribosomal protein S21. (87 aa)
	ENSNMLP00000005239	Mitochondrial ribosomal protein S31. (363 aa)
	ENSNMLP00000005295	Mitochondrial ribosomal protein L32. (170 aa)
	ENSNMLP00000006147	Mitochondrial ribosomal protein L44. (331 aa)
	ENSNMLP00000006181	Mitochondrial ribosomal protein L38. (394 aa)
	ENSNMLP00000006768	Mitochondrial ribosomal protein L58. (194 aa)
	ENSNMLP00000007364	Mitochondrial ribosomal protein S14. (145 aa)
	ENSNMLP00000007564	Mitochondrial ribosomal protein L51. (128 aa)
	ENSNMLP00000007687	annotation not available (184 aa)
	ENSNMLP00000008770	Mitochondrial ribosomal protein S26. (207 aa)
	ENSNMLP00000009457	Mitochondrial ribosomal protein S9. (370 aa)
	ENSNMLP00000009840	Mitochondrial ribosomal protein L43. (151 aa)
	ENSNMLP00000010706	Mitochondrial ribosomal protein L3. (350 aa)
	ENSNMLP00000010960	Methyltransferase like 17. (477 aa)
	ENSNMLP00000011469	Mitochondrial ribosomal protein L48. (209 aa)
	ENSNMLP00000011668	annotation not available (641 aa)
	ENSNMLP00000011780	Mitochondrial ribosomal protein L37. (439 aa)
	ENSNMLP00000012020	HemK methyltransferase family member 1. (338 aa)
	ENSNMLP00000013072	Mitochondrial ribosomal protein L34. (122 aa)
	ENSNMLP00000013343	Growth arrest and DNA-damage-inducible, gamma interacting protein 1. (239 aa)
	ENSNMLP00000013938	G elongation factor, mitochondrial 1. (748 aa)
	ENSNMLP00000014137	Mitochondrial ribosomal protein L35. (177 aa)
	ENSNMLP00000014212	Coiled-coil-helix-coiled-coil-helix domain containing 1. (121 aa)
	ENSNMLP00000015129	Mitochondrial ribosomal protein L54. (138 aa)
	ENSNMLP00000015267	Mitochondrial ribosomal protein L40. (202 aa)
	ENSNMLP00000015747	annotation not available (126 aa)
	ENSNMLP00000016657	Mitochondrial ribosomal protein L22. (250 aa)
	ENSNMLP00000018701	NOP2/Sun RNA methyltransferase 4. (385 aa)
	ENSNMLP00000018927	NME/NM23 nucleoside diphosphate kinase 3. (169 aa)
	ENSNMLP00000018931	Mitochondrial ribosomal protein S34. (218 aa)
	ENSNMLP00000019416	Mitochondrial ribosomal protein L2. (262 aa)
	ENSNMLP00000019745	Mitochondrial ribosomal protein L17. (165 aa)
	ENSNMLP00000020927	annotation not available (452 aa)
	ENSNMLP00000021455	Mitochondrial ribosomal protein S11. (190 aa)
	ENSNMLP00000021456	Mitochondrial ribosomal protein L46. (298 aa)
	ENSNMLP00000022778	Mitochondrial ribosomal protein S33. (106 aa)
	ENSNMLP00000023288	annotation not available (293 aa)
	ENSNMLP00000023605	Death associated protein 3. (367 aa)
	ENSNMLP00000023866	annotation not available (1040 aa)
	ENSNMLP00000024095	Mitochondrial ribosomal protein S25. (172 aa)
	ENSNMLP00000024320	Mitochondrial ribosomal protein S18A. (211 aa)
	ENSNMLP00000024694	Mitochondrial ribosomal protein L16. (255 aa)
	ENSNMLP00000024798	Mitochondrial ribosomal protein L12. (208 aa)
	ENSNMLP00000025036	Mitochondrial ribosomal protein L10. (250 aa)
	ENSNMLP00000025128	Mitochondrial ribosomal protein S24. (168 aa)
	ENSNMLP00000025342	Mitochondrial ribosomal protein S17. (145 aa)
	ENSNMLP00000025579	Phosphatidylethanolamine binding protein 1. (187 aa)
	ENSNMLP00000025662	Mitochondrial ribosomal protein L27. (147 aa)
	ENSNMLP00000026556	Mitochondrial transcription termination factor 4. (308 aa)
	ENSNMLP00000026640	annotation not available (641 aa)
	ENSNMLP00000026722	annotation not available (145 aa)
	ENSNMLP00000026867	Mitochondrial ribosomal protein L4. (278 aa)
	ENSNMLP00000026882	Si:dkey-251i10.2. (193 aa)
	ENSNMLP00000026901	Mitochondrial ribosomal protein L45. (306 aa)
	ENSNMLP00000026915	annotation not available (224 aa)
	ENSNMLP00000027953	Mitochondrial ribosomal protein S7. (229 aa)
	ENSNMLP00000028467	annotation not available (187 aa)
	SEC61A1	SEC61 translocon alpha 1 subunit. (486 aa)
	ENSNMLP00000028812	Coiled-coil domain containing 32. (201 aa)
	ENSNMLP00000029731	Mitochondrial ribosomal protein S23. (193 aa)
	NSUN7	NOP2/Sun RNA methyltransferase family member 7. (540 aa)
	ENSNMLP00000030394	Mitochondrial ribosomal protein L18. (183 aa)
	ENSNMLP00000030745	annotation not available (210 aa)
	ENSNMLP00000031292	Mitochondrial ribosomal protein S12. (151 aa)
	ENSNMLP00000032458	Ribosomal protein S3. (249 aa)
	ENSNMLP00000032742	Mitochondrial ribosomal protein L13. (180 aa)
	ENSNMLP00000033135	Mitochondrial ribosomal protein L30. (157 aa)
	ENSNMLP00000033287	Mitochondrial ribosomal protein L52. (129 aa)
	ENSNMLP00000033582	OXA1L mitochondrial inner membrane protein. (485 aa)
	ENSNMLP00000033938	Mitochondrial ribosome recycling factor. (266 aa)
	ENSNMLP00000034034	NME/NM23 nucleoside diphosphate kinase 4. (208 aa)
	ENSNMLP00000034101	Mitochondrial ribosomal protein S16. (132 aa)
	ENSNMLP00000034623	Mitochondrial ribosomal protein L57. (103 aa)
	ENSNMLP00000034629	Mitochondrial translational release factor 1-like. (392 aa)
	ENSNMLP00000034747	Ribosomal protein S15a. (130 aa)
	ENSNMLP00000035587	Mitochondrial ribosomal protein S10. (213 aa)
	ENSNMLP00000035970	Mitochondrial ribosomal protein S22. (318 aa)
	ENSNMLP00000036141	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1. (331 aa)
	ENSNMLP00000036142	Tu translation elongation factor, mitochondrial. (446 aa)
	ENSNMLP00000036917	Mitochondrial ribosomal protein L11. (194 aa)
	ENSNMLP00000037345	Ts translation elongation factor, mitochondrial. (295 aa)
	ENSNMLP00000037379	Mitochondrial ribosomal protein S30. (423 aa)
	ENSNMLP00000037647	Mitochondrial ribosomal protein L23. (159 aa)
	SMKR1	Small lysine rich protein 1. (33 aa)
	ENSNMLP00000038109	annotation not available (278 aa)
	ENSNMLP00000038457	Mitochondrial ribosomal protein S27. (439 aa)
	ENSNMLP00000039358	Mitochondrial ribosomal protein S18C. (129 aa)
	ENSNMLP00000039662	Chromosome 12 open reading frame 65. (157 aa)
	ENSNMLP00000039793	N-6 adenine-specific DNA methyltransferase 1. (253 aa)
	ENSNMLP00000040049	Mitochondrial ribosome-associated GTPase 2. (430 aa)
	ENSNMLP00000040198	Mitochondrial ribosomal protein S15. (258 aa)
	ENSNMLP00000040498	annotation not available (150 aa)
	ENSNMLP00000041043	Mitochondrial rRNA methyltransferase 2. (235 aa)
	ENSNMLP00000042087	Mitochondrial ribosomal protein L15. (296 aa)
	ENSNMLP00000042231	threonyl-tRNA synthetase 1. (719 aa)
	ENSNMLP00000042362	Mitochondrial ribosomal protein S18B. (252 aa)
	ENSNMLP00000042911	Aurora kinase A interacting protein 1. (206 aa)
	ENSNMLP00000043013	Mitochondrial ribosomal protein S6. (116 aa)
	ENSNMLP00000043606	ATP synthase peripheral stalk subunit OSCP. (209 aa)
	ENSNMLP00000043673	Mitochondrial ribosomal protein L19. (317 aa)
	ENSNMLP00000044017	Mitochondrial ribosomal protein L33. (60 aa)
	ENSNMLP00000044481	Mitochondrial ribosomal protein L39. (300 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000352	ENSNMLP00000000443	ENSNMLP00000000352	ENSNMLP00000000443	annotation not available	Mitochondrial ribosomal protein L36.	0.743
ENSNMLP00000000352	ENSNMLP00000000565	ENSNMLP00000000352	ENSNMLP00000000565	annotation not available	Ribosomal protein L23.	0.746
ENSNMLP00000000352	ENSNMLP00000000767	ENSNMLP00000000352	ENSNMLP00000000767	annotation not available	Mitochondrial ribosomal protein L9.	0.733
ENSNMLP00000000352	ENSNMLP00000000781	ENSNMLP00000000352	ENSNMLP00000000781	annotation not available	Mitochondrial ribosomal protein L24.	0.825
ENSNMLP00000000352	ENSNMLP00000000954	ENSNMLP00000000352	ENSNMLP00000000954	annotation not available	Mitochondrial ribosomal protein L53.	0.649
ENSNMLP00000000352	ENSNMLP00000001294	ENSNMLP00000000352	ENSNMLP00000001294	annotation not available	Mitochondrial ribosomal protein S35.	0.877
ENSNMLP00000000352	ENSNMLP00000002012	ENSNMLP00000000352	ENSNMLP00000002012	annotation not available	Era-like 12S mitochondrial rRNA chaperone 1.	0.753
ENSNMLP00000000352	ENSNMLP00000002192	ENSNMLP00000000352	ENSNMLP00000002192	annotation not available	Mitochondrial ribosomal protein L47.	0.693
ENSNMLP00000000352	ENSNMLP00000003271	ENSNMLP00000000352	ENSNMLP00000003271	annotation not available	Mitochondrial ribosomal protein L14.	0.694
ENSNMLP00000000352	ENSNMLP00000003824	ENSNMLP00000000352	ENSNMLP00000003824	annotation not available	Mitochondrial ribosomal protein L28.	0.720
ENSNMLP00000000352	ENSNMLP00000004363	ENSNMLP00000000352	ENSNMLP00000004363	annotation not available	Mitochondrial ribosomal protein L20.	0.815
ENSNMLP00000000352	ENSNMLP00000005223	ENSNMLP00000000352	ENSNMLP00000005223	annotation not available	Mitochondrial ribosomal protein S21.	0.430
ENSNMLP00000000352	ENSNMLP00000005239	ENSNMLP00000000352	ENSNMLP00000005239	annotation not available	Mitochondrial ribosomal protein S31.	0.877
ENSNMLP00000000352	ENSNMLP00000005295	ENSNMLP00000000352	ENSNMLP00000005295	annotation not available	Mitochondrial ribosomal protein L32.	0.846
ENSNMLP00000000352	ENSNMLP00000006147	ENSNMLP00000000352	ENSNMLP00000006147	annotation not available	Mitochondrial ribosomal protein L44.	0.710
ENSNMLP00000000352	ENSNMLP00000006181	ENSNMLP00000000352	ENSNMLP00000006181	annotation not available	Mitochondrial ribosomal protein L38.	0.684
ENSNMLP00000000352	ENSNMLP00000006768	ENSNMLP00000000352	ENSNMLP00000006768	annotation not available	Mitochondrial ribosomal protein L58.	0.781
ENSNMLP00000000352	ENSNMLP00000007364	ENSNMLP00000000352	ENSNMLP00000007364	annotation not available	Mitochondrial ribosomal protein S14.	0.927
ENSNMLP00000000352	ENSNMLP00000007564	ENSNMLP00000000352	ENSNMLP00000007564	annotation not available	Mitochondrial ribosomal protein L51.	0.690
ENSNMLP00000000352	ENSNMLP00000007687	ENSNMLP00000000352	ENSNMLP00000007687	annotation not available	annotation not available	0.711