(7 nodes) Mixed, incl. Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins., and Von Willebrand factor (vWF) type D domain network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000006652	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a. (1420 aa)
	ENSNMLP00000010094	annotation not available (251 aa)
	ENSNMLP00000012927	annotation not available (249 aa)
	ENSNMLP00000012934	annotation not available (236 aa)
	ENSNMLP00000020899	annotation not available (466 aa)
	ENSNMLP00000024877	Sushi, nidogen and EGF-like domains 1. (1324 aa)
	ENSNMLP00000027120	annotation not available (231 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000006652	ENSNMLP00000024877	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a.	Sushi, nidogen and EGF-like domains 1.	0.428
ENSNMLP00000012927	ENSNMLP00000012934	annotation not available	annotation not available	0.827
ENSNMLP00000012934	ENSNMLP00000012927	annotation not available	annotation not available	0.827
ENSNMLP00000012934	ENSNMLP00000024877	annotation not available	Sushi, nidogen and EGF-like domains 1.	0.530
ENSNMLP00000020899	ENSNMLP00000024877	annotation not available	Sushi, nidogen and EGF-like domains 1.	0.575
ENSNMLP00000024877	ENSNMLP00000006652	Sushi, nidogen and EGF-like domains 1.	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a.	0.428
ENSNMLP00000024877	ENSNMLP00000012934	Sushi, nidogen and EGF-like domains 1.	annotation not available	0.530
ENSNMLP00000024877	ENSNMLP00000020899	Sushi, nidogen and EGF-like domains 1.	annotation not available	0.575