(10 nodes) Protein kinase A signaling network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000023957	Endothelin receptor type Ab. (440 aa)
	ENSNMLP00000003816	annotation not available (241 aa)
	ENSNMLP00000032039	Myomesin 2a. (1297 aa)
	ENSNMLP00000008650	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000028321	Endothelin receptor type Aa. (440 aa)
	ENSNMLP00000027351	annotation not available (396 aa)
	ENSNMLP00000024742	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a. (326 aa)
	ENSNMLP00000012077	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000022738	annotation not available (110 aa)
	ENSNMLP00000023624	RAB13, member RAS oncogene family. (201 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003816	ENSNMLP00000024742	annotation not available	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	0.822
ENSNMLP00000003816	ENSNMLP00000027351	annotation not available	annotation not available	0.820
ENSNMLP00000008650	ENSNMLP00000023624	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	RAB13, member RAS oncogene family.	0.414
ENSNMLP00000012077	ENSNMLP00000023624	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	RAB13, member RAS oncogene family.	0.414
ENSNMLP00000022738	ENSNMLP00000023957	annotation not available	Endothelin receptor type Ab.	0.992
ENSNMLP00000022738	ENSNMLP00000028321	annotation not available	Endothelin receptor type Aa.	0.993
ENSNMLP00000023624	ENSNMLP00000008650	RAB13, member RAS oncogene family.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	0.414
ENSNMLP00000023624	ENSNMLP00000012077	RAB13, member RAS oncogene family.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	0.414
ENSNMLP00000023624	ENSNMLP00000024742	RAB13, member RAS oncogene family.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	0.819
ENSNMLP00000023624	ENSNMLP00000027351	RAB13, member RAS oncogene family.	annotation not available	0.819
ENSNMLP00000023957	ENSNMLP00000022738	Endothelin receptor type Ab.	annotation not available	0.992
ENSNMLP00000023957	ENSNMLP00000028321	Endothelin receptor type Ab.	Endothelin receptor type Aa.	0.839
ENSNMLP00000024742	ENSNMLP00000003816	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	annotation not available	0.822
ENSNMLP00000024742	ENSNMLP00000023624	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	RAB13, member RAS oncogene family.	0.819
ENSNMLP00000027351	ENSNMLP00000003816	annotation not available	annotation not available	0.820
ENSNMLP00000027351	ENSNMLP00000023624	annotation not available	RAB13, member RAS oncogene family.	0.819
ENSNMLP00000028321	ENSNMLP00000022738	Endothelin receptor type Aa.	annotation not available	0.993
ENSNMLP00000028321	ENSNMLP00000023957	Endothelin receptor type Aa.	Endothelin receptor type Ab.	0.839