(16 nodes) Aggresome network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000007522	Sequestosome 1. (445 aa)
	ENSNMLP00000007293	Ran GTPase activating protein 1b. (410 aa)
	ENSNMLP00000005618	Caspase recruitment domain family, member 14. (729 aa)
	ENSNMLP00000013787	RAN GTPase activating protein 1a. (411 aa)
	ENSNMLP00000014197	ER degradation enhancer, mannosidase alpha-like 1. (646 aa)
	ENSNMLP00000017652	Heat shock protein family, member 7 (cardiovascular). (140 aa)
	ENSNMLP00000029088	Zinc finger and BTB domain containing 14. (377 aa)
	ENSNMLP00000036137	Polymerase (DNA directed), delta 1, catalytic subunit. (1145 aa)
	ENSNMLP00000041551	Ring finger protein 32. (348 aa)
	ENSNMLP00000037256	annotation not available (216 aa)
	ENSNMLP00000037251	annotation not available (192 aa)
	ENSNMLP00000004266	Kelch-like family member 14. (605 aa)
	ENSNMLP00000012231	Tripartite motif containing 66. (1168 aa)
	ENSNMLP00000010393	Si:ch211-263k4.2. (994 aa)
	ENSNMLP00000010375	Si:ch211-263k4.2. (141 aa)
	ENSNMLP00000008989	annotation not available (157 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000004266	ENSNMLP00000007522	Kelch-like family member 14.	Sequestosome 1.	0.480
ENSNMLP00000004266	ENSNMLP00000008989	Kelch-like family member 14.	annotation not available	0.480
ENSNMLP00000007522	ENSNMLP00000004266	Sequestosome 1.	Kelch-like family member 14.	0.480
ENSNMLP00000007522	ENSNMLP00000037251	Sequestosome 1.	annotation not available	0.917
ENSNMLP00000007522	ENSNMLP00000037256	Sequestosome 1.	annotation not available	0.917
ENSNMLP00000008989	ENSNMLP00000004266	annotation not available	Kelch-like family member 14.	0.480
ENSNMLP00000008989	ENSNMLP00000037251	annotation not available	annotation not available	0.907
ENSNMLP00000008989	ENSNMLP00000037256	annotation not available	annotation not available	0.907
ENSNMLP00000037251	ENSNMLP00000007522	annotation not available	Sequestosome 1.	0.917
ENSNMLP00000037251	ENSNMLP00000008989	annotation not available	annotation not available	0.907
ENSNMLP00000037251	ENSNMLP00000037256	annotation not available	annotation not available	0.701
ENSNMLP00000037256	ENSNMLP00000007522	annotation not available	Sequestosome 1.	0.917
ENSNMLP00000037256	ENSNMLP00000008989	annotation not available	annotation not available	0.907
ENSNMLP00000037256	ENSNMLP00000037251	annotation not available	annotation not available	0.701