(13 nodes) Mixed, incl. Uracil DNA N-glycosylase activity, and Carbohydrate kinase network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR24328.1	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AJR24329.1	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AJR24330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	AJR24331.1	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AJR25199.1	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJR25535.1	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (401 aa)
	nnrE	Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] (462 aa)
	AJR26508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	AJR25536.1	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AJR25538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	AJR26509.1	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AJR25540.1	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AJR26035.1	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24328.1	AJR24329.1	TZ53_11910	TZ53_11915	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR24328.1	AJR24330.1	TZ53_11910	TZ53_11920	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR24328.1	AJR24331.1	TZ53_11910	TZ53_11925	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJR24328.1	AJR25199.1	TZ53_11910	TZ53_17150	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR24328.1	AJR26509.1	TZ53_11910	TZ53_19185	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR24329.1	AJR24328.1	TZ53_11915	TZ53_11910	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR24329.1	AJR24330.1	TZ53_11915	TZ53_11920	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR24329.1	AJR24331.1	TZ53_11915	TZ53_11925	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJR24330.1	AJR24328.1	TZ53_11920	TZ53_11910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR24330.1	AJR24329.1	TZ53_11920	TZ53_11915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR24330.1	AJR24331.1	TZ53_11920	TZ53_11925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AJR24331.1	AJR24328.1	TZ53_11925	TZ53_11910	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJR24331.1	AJR24329.1	TZ53_11925	TZ53_11915	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJR24331.1	AJR24330.1	TZ53_11925	TZ53_11920	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AJR25199.1	AJR24328.1	TZ53_17150	TZ53_11910	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25199.1	AJR26509.1	TZ53_17150	TZ53_19185	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR25535.1	AJR25536.1	TZ53_19150	TZ53_19165	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR25535.1	AJR25538.1	TZ53_19150	TZ53_19175	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJR25535.1	AJR25540.1	TZ53_19150	TZ53_19190	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AJR25535.1	AJR26508.1	TZ53_19150	TZ53_19160	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861