(8 nodes) Prespliceosome network (Atta colombica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC53_13733	Splicing factor 3B subunit 1. (1323 aa)
	ALC53_01881	U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
	ALC53_05837	UPF0667 protein C1orf55 like protein. (263 aa)
	ALC53_07987	RING-type domain-containing protein. (363 aa)
	ALC53_09407	CDK5RAP1-like protein. (1387 aa)
	ALC53_11161	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
	ALC53_11068	Splicing factor 3A subunit 1. (768 aa)
	ALC53_13279	Splicing factor 3A subunit 2. (274 aa)

Your Current Organism:

Atta colombica

NCBI taxonomy Id: 520822
Other names: A. colombica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC53_01881	ALC53_09407	A0A151I5E9	A0A195B719	U1 small nuclear ribonucleoprotein 70 kDa.	CDK5RAP1-like protein.	0.938
ALC53_01881	ALC53_11068	A0A151I5E9	A0A195B1P3	U1 small nuclear ribonucleoprotein 70 kDa.	Splicing factor 3A subunit 1.	0.722
ALC53_01881	ALC53_11161	A0A151I5E9	A0A195B202	U1 small nuclear ribonucleoprotein 70 kDa.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.989
ALC53_01881	ALC53_13279	A0A151I5E9	A0A195AW18	U1 small nuclear ribonucleoprotein 70 kDa.	Splicing factor 3A subunit 2.	0.928
ALC53_01881	ALC53_13733	A0A151I5E9	A0A195AUH1	U1 small nuclear ribonucleoprotein 70 kDa.	Splicing factor 3B subunit 1.	0.957
ALC53_09407	ALC53_01881	A0A195B719	A0A151I5E9	CDK5RAP1-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.938
ALC53_09407	ALC53_11068	A0A195B719	A0A195B1P3	CDK5RAP1-like protein.	Splicing factor 3A subunit 1.	0.846
ALC53_09407	ALC53_11161	A0A195B719	A0A195B202	CDK5RAP1-like protein.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.957
ALC53_09407	ALC53_13279	A0A195B719	A0A195AW18	CDK5RAP1-like protein.	Splicing factor 3A subunit 2.	0.908
ALC53_09407	ALC53_13733	A0A195B719	A0A195AUH1	CDK5RAP1-like protein.	Splicing factor 3B subunit 1.	0.716
ALC53_11068	ALC53_01881	A0A195B1P3	A0A151I5E9	Splicing factor 3A subunit 1.	U1 small nuclear ribonucleoprotein 70 kDa.	0.722
ALC53_11068	ALC53_09407	A0A195B1P3	A0A195B719	Splicing factor 3A subunit 1.	CDK5RAP1-like protein.	0.846
ALC53_11068	ALC53_11161	A0A195B1P3	A0A195B202	Splicing factor 3A subunit 1.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.929
ALC53_11068	ALC53_13279	A0A195B1P3	A0A195AW18	Splicing factor 3A subunit 1.	Splicing factor 3A subunit 2.	0.998
ALC53_11068	ALC53_13733	A0A195B1P3	A0A195AUH1	Splicing factor 3A subunit 1.	Splicing factor 3B subunit 1.	0.994
ALC53_11161	ALC53_01881	A0A195B202	A0A151I5E9	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	U1 small nuclear ribonucleoprotein 70 kDa.	0.989
ALC53_11161	ALC53_09407	A0A195B202	A0A195B719	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	CDK5RAP1-like protein.	0.957
ALC53_11161	ALC53_11068	A0A195B202	A0A195B1P3	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	Splicing factor 3A subunit 1.	0.929
ALC53_11161	ALC53_13279	A0A195B202	A0A195AW18	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	Splicing factor 3A subunit 2.	0.957
ALC53_11161	ALC53_13733	A0A195B202	A0A195AUH1	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	Splicing factor 3B subunit 1.	0.989