STRINGSTRING
VDBG_01941 VDBG_01941 VDBG_04821 VDBG_04821 VDBG_04873 VDBG_04873 VDBG_04947 VDBG_04947 VDBG_04444 VDBG_04444 VDBG_07609 VDBG_07609 VDBG_08401 VDBG_08401 VDBG_08853 VDBG_08853
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_019412-deoxy-D-gluconate 3-dehydrogenase. (260 aa)
VDBG_04821Gluconokinase; Belongs to the gluconokinase GntK/GntV family. (225 aa)
VDBG_048736-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (507 aa)
VDBG_04947Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. (435 aa)
VDBG_04444Ribulose-phosphate 3-epimerase. (214 aa)
VDBG_07609Ribose-5-phosphate isomerase B. (160 aa)
VDBG_08401Ribose-5-phosphate isomerase. (281 aa)
VDBG_088536-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (295 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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