30 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_03557	40S ribosomal protein S27a. (153 aa)
	VDBG_10130	Uncharacterized protein. (337 aa)
	VDBG_10123	BTB/POZ domain-containing protein. (306 aa)
	VDBG_09307	ApbA domain-containing protein. (117 aa)
	VDBG_09137	Uncharacterized protein. (479 aa)
	VDBG_08817	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily. (442 aa)
	VDBG_08639	RING-box protein. (119 aa)
	VDBG_08567	Glycerate kinase. (344 aa)
	VDBG_08460	Uncharacterized protein. (692 aa)
	VDBG_08345	Uncharacterized protein. (246 aa)
	VDBG_08213	Uncharacterized protein. (98 aa)
	VDBG_08212	CIA30 family protein. (233 aa)
	VDBG_07583	Predicted protein. (150 aa)
	VDBG_07461	Uncharacterized protein. (918 aa)
	VDBG_05980	SKT5. (676 aa)
	VDBG_05813	Uncharacterized protein. (143 aa)
	VDBG_03780	Glycerol uptake protein; Belongs to the membrane-bound acyltransferase family. (277 aa)
	VDBG_03779	Uncharacterized protein. (193 aa)
	VDBG_03729	Uncharacterized protein. (736 aa)
	VDBG_04155	Uncharacterized protein. (508 aa)
	VDBG_02566	Integral membrane protein. (575 aa)
	VDBG_03077	PDCD2_C domain-containing protein. (433 aa)
	VDBG_02946	PRKCSH domain-containing protein. (538 aa)
	VDBG_02058	SKT5. (993 aa)
	VDBG_01613	AFG2. (609 aa)
	VDBG_02302	Predicted protein. (676 aa)
	VDBG_00723	Uncharacterized protein. (1481 aa)
	VDBG_00637	Uncharacterized protein. (384 aa)
	VDBG_00397	Uncharacterized protein. (874 aa)
	VDBG_00367	cAMP-dependent protein kinase regulatory subunit. (216 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00367	VDBG_00397	C9S5N4	C9S5R4	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein.	0.925
VDBG_00367	VDBG_08817	C9S5N4	C9SV92	cAMP-dependent protein kinase regulatory subunit.	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily.	0.986
VDBG_00367	VDBG_09307	C9S5N4	C9SWN2	cAMP-dependent protein kinase regulatory subunit.	ApbA domain-containing protein.	0.946
VDBG_00397	VDBG_00367	C9S5R4	C9S5N4	Uncharacterized protein.	cAMP-dependent protein kinase regulatory subunit.	0.925
VDBG_00637	VDBG_08639	C9S6N8	C9SUR4	Uncharacterized protein.	RING-box protein.	0.594
VDBG_00723	VDBG_02946	C9S704	C9SCM2	Uncharacterized protein.	PRKCSH domain-containing protein.	0.510
VDBG_00723	VDBG_03779	C9S704	C9SH76	Uncharacterized protein.	Uncharacterized protein.	0.536
VDBG_00723	VDBG_03780	C9S704	C9SH77	Uncharacterized protein.	Glycerol uptake protein; Belongs to the membrane-bound acyltransferase family.	0.536
VDBG_00723	VDBG_07583	C9S704	C9SRQ8	Uncharacterized protein.	Predicted protein.	0.510
VDBG_01613	VDBG_02058	C9SAT0	C9SC65	AFG2.	SKT5.	0.471
VDBG_01613	VDBG_02566	C9SAT0	C9SDX1	AFG2.	Integral membrane protein.	0.436
VDBG_01613	VDBG_02946	C9SAT0	C9SCM2	AFG2.	PRKCSH domain-containing protein.	0.815
VDBG_01613	VDBG_03557	C9SAT0	C9SGA8	AFG2.	40S ribosomal protein S27a.	0.574
VDBG_01613	VDBG_03729	C9SAT0	C9SH26	AFG2.	Uncharacterized protein.	0.918
VDBG_01613	VDBG_05980	C9SAT0	C9SM56	AFG2.	SKT5.	0.471
VDBG_01613	VDBG_07461	C9SAT0	C9SRD6	AFG2.	Uncharacterized protein.	0.471
VDBG_01613	VDBG_07583	C9SAT0	C9SRQ8	AFG2.	Predicted protein.	0.815
VDBG_01613	VDBG_08212	C9SAT0	C9STI7	AFG2.	CIA30 family protein.	0.574
VDBG_01613	VDBG_08213	C9SAT0	C9STI8	AFG2.	Uncharacterized protein.	0.574
VDBG_01613	VDBG_08639	C9SAT0	C9SUR4	AFG2.	RING-box protein.	0.640