(17 nodes) Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain, and Helix_turn_helix, Lux Regulon network (Niastella populi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OQP45747.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	OQP67900.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	OQP65666.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)
	OQP65671.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (376 aa)
	OQP65675.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (615 aa)
	OQP65676.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	OQP65678.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (706 aa)
	OQP65013.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (127 aa)
	OQP64619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (205 aa)
	OQP63641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (140 aa)
	OQP62991.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
	OQP60813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (661 aa)
	OQP58759.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (348 aa)
	OQP57877.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	OQP57495.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	OQP56734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (479 aa)
	OQP56225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (725 aa)

Your Current Organism:

Niastella populi

NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OQP45747.1	OQP56225.1	A4R26_09675	A4R26_26695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.878
OQP45747.1	OQP56734.1	A4R26_09675	A4R26_25665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.874
OQP45747.1	OQP58759.1	A4R26_09675	A4R26_22605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.878
OQP45747.1	OQP60813.1	A4R26_09675	A4R26_19615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.845
OQP45747.1	OQP62991.1	A4R26_09675	A4R26_17585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.877
OQP45747.1	OQP64619.1	A4R26_09675	A4R26_16365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.874
OQP45747.1	OQP65671.1	A4R26_09675	A4R26_14695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.880
OQP45747.1	OQP65675.1	A4R26_09675	A4R26_14715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.878
OQP45747.1	OQP65678.1	A4R26_09675	A4R26_14730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.860
OQP56225.1	OQP45747.1	A4R26_26695	A4R26_09675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
OQP56225.1	OQP56734.1	A4R26_26695	A4R26_25665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
OQP56225.1	OQP57495.1	A4R26_26695	A4R26_24290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
OQP56225.1	OQP57877.1	A4R26_26695	A4R26_23505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
OQP56225.1	OQP58759.1	A4R26_26695	A4R26_22605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.491
OQP56225.1	OQP62991.1	A4R26_26695	A4R26_17585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.655
OQP56225.1	OQP63641.1	A4R26_26695	A4R26_16855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.878
OQP56225.1	OQP64619.1	A4R26_26695	A4R26_16365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.416
OQP56225.1	OQP65013.1	A4R26_26695	A4R26_14985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.797
OQP56225.1	OQP65666.1	A4R26_26695	A4R26_14665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.879
OQP56225.1	OQP65671.1	A4R26_26695	A4R26_14695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.481