STRINGSTRING
ribB-2 ribB-2 CTM89_01420 CTM89_01420 CTM89_02145 CTM89_02145 CTM89_11095 CTM89_11095 arsH arsH CTM89_05140 CTM89_05140 CTM89_10000 CTM89_10000 CTM89_09995 CTM89_09995 ribB ribB ribH ribH ribA ribA ribH-2 ribH-2 GCA_001557755_01576 GCA_001557755_01576 lumP lumP ribD ribD CTM89_06295 CTM89_06295 CTM89_14030 CTM89_14030 CTM89_13180 CTM89_13180 CTM89_09115 CTM89_09115 CTM89_19610 CTM89_19610 ribA-2 ribA-2 CTM89_00460 CTM89_00460 CTM89_13315 CTM89_13315 CTM89_20225 CTM89_20225 CTM89_06130 CTM89_06130 CTM89_03585 CTM89_03585
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ribB-2Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. (365 aa)
CTM89_01420Unannotated protein. (202 aa)
CTM89_02145Unannotated protein. (228 aa)
CTM89_11095Unannotated protein; Belongs to the ribF family. (320 aa)
arsHUnannotated protein. (239 aa)
CTM89_05140Unannotated protein; Belongs to the class B bacterial acid phosphatase family. (239 aa)
CTM89_10000Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (374 aa)
CTM89_09995Unannotated protein. (218 aa)
ribBUnannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. (367 aa)
ribHUnannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. (156 aa)
ribAUnannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. (197 aa)
ribH-2Unannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. (156 aa)
GCA_001557755_01576Unannotated protein. (219 aa)
lumPUnannotated protein; Antenna protein that modulates the color of the bioluminescence emission of the luciferase. In the presence of LumP, luciferase emission is shifted to higher energy values (shorter wavelength). (186 aa)
ribDUnannotated protein. (146 aa)
CTM89_06295Unannotated protein. (585 aa)
CTM89_14030Unannotated protein. (241 aa)
CTM89_13180Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (235 aa)
CTM89_09115Unannotated protein. (236 aa)
CTM89_19610Unannotated protein. (245 aa)
ribA-2Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. (199 aa)
CTM89_00460Unannotated protein. (264 aa)
CTM89_13315Unannotated protein. (575 aa)
CTM89_20225Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (324 aa)
CTM89_06130Unannotated protein. (273 aa)
CTM89_03585Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (314 aa)
Your Current Organism:
Photobacterium leiognathi
NCBI taxonomy Id: 553611
Other names: ATCC 25521, CAIM 327, CCUG 16229, CIP 66.5, LMG 4228, LMG:4228, P. leiognathi, Photobacterium sp. CMB_001
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