(7 nodes) pICln-Sm protein complex network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	clns1a	Chloride nucleotide-sensitive channel 1A. (252 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000051726	clns1a	ENSCGOP00000051726	ENSCGOP00000017694	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.919
ENSCGOP00000051726	snrpd1	ENSCGOP00000051726	ENSCGOP00000054741	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSCGOP00000051726	snrpd2	ENSCGOP00000051726	ENSCGOP00000033977	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.998
ENSCGOP00000051726	snrpd3	ENSCGOP00000051726	ENSCGOP00000050914	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.998
ENSCGOP00000051726	snrpe	ENSCGOP00000051726	ENSCGOP00000024158	annotation not available	Small nuclear ribonucleoprotein polypeptide E.	0.998
ENSCGOP00000051749	clns1a	ENSCGOP00000051749	ENSCGOP00000017694	Small nuclear ribonucleoprotein polypeptide F.	Chloride nucleotide-sensitive channel 1A.	0.919
ENSCGOP00000051749	snrpd1	ENSCGOP00000051749	ENSCGOP00000054741	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSCGOP00000051749	snrpd2	ENSCGOP00000051749	ENSCGOP00000033977	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein D2 polypeptide.	0.998
ENSCGOP00000051749	snrpd3	ENSCGOP00000051749	ENSCGOP00000050914	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein D3 polypeptide.	0.998
ENSCGOP00000051749	snrpe	ENSCGOP00000051749	ENSCGOP00000024158	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptide E.	0.998
clns1a	ENSCGOP00000051726	ENSCGOP00000017694	ENSCGOP00000051726	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.919
clns1a	ENSCGOP00000051749	ENSCGOP00000017694	ENSCGOP00000051749	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.919
clns1a	snrpd1	ENSCGOP00000017694	ENSCGOP00000054741	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D1 polypeptide.	0.996
clns1a	snrpd2	ENSCGOP00000017694	ENSCGOP00000033977	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D2 polypeptide.	0.974
clns1a	snrpd3	ENSCGOP00000017694	ENSCGOP00000050914	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D3 polypeptide.	0.983
clns1a	snrpe	ENSCGOP00000017694	ENSCGOP00000024158	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide E.	0.967
snrpd1	ENSCGOP00000051726	ENSCGOP00000054741	ENSCGOP00000051726	Small nuclear ribonucleoprotein D1 polypeptide.	annotation not available	0.998
snrpd1	ENSCGOP00000051749	ENSCGOP00000054741	ENSCGOP00000051749	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein polypeptide F.	0.998
snrpd1	clns1a	ENSCGOP00000054741	ENSCGOP00000017694	Small nuclear ribonucleoprotein D1 polypeptide.	Chloride nucleotide-sensitive channel 1A.	0.996
snrpd1	snrpd2	ENSCGOP00000054741	ENSCGOP00000033977	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein D2 polypeptide.	0.999