(5 nodes) Mixed, incl. Tumor necrosis factor receptor activity, and Positive regulation of miRNA maturation network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000008892	Uncharacterized protein. (305 aa)
	LOC109998212	Baculoviral IAP repeat containing 2. (656 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (683 aa)
	LOC109996590	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (519 aa)
	tradd	Tnfrsf1a-associated via death domain. (291 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000008892	LOC109996590	ENSLBEP00000008892	ENSLBEP00000023058	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.984
ENSLBEP00000008892	LOC109998212	ENSLBEP00000008892	ENSLBEP00000020099	Uncharacterized protein.	Baculoviral IAP repeat containing 2.	0.979
ENSLBEP00000008892	ripk1	ENSLBEP00000008892	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.970
ENSLBEP00000008892	tradd	ENSLBEP00000008892	ENSLBEP00000032329	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.996
LOC109996590	ENSLBEP00000008892	ENSLBEP00000023058	ENSLBEP00000008892	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.984
LOC109996590	LOC109998212	ENSLBEP00000023058	ENSLBEP00000020099	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Baculoviral IAP repeat containing 2.	0.951
LOC109996590	ripk1	ENSLBEP00000023058	ENSLBEP00000022169	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.963
LOC109996590	tradd	ENSLBEP00000023058	ENSLBEP00000032329	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Tnfrsf1a-associated via death domain.	0.989
LOC109998212	ENSLBEP00000008892	ENSLBEP00000020099	ENSLBEP00000008892	Baculoviral IAP repeat containing 2.	Uncharacterized protein.	0.979
LOC109998212	LOC109996590	ENSLBEP00000020099	ENSLBEP00000023058	Baculoviral IAP repeat containing 2.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.951
LOC109998212	ripk1	ENSLBEP00000020099	ENSLBEP00000022169	Baculoviral IAP repeat containing 2.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.953
LOC109998212	tradd	ENSLBEP00000020099	ENSLBEP00000032329	Baculoviral IAP repeat containing 2.	Tnfrsf1a-associated via death domain.	0.986
ripk1	ENSLBEP00000008892	ENSLBEP00000022169	ENSLBEP00000008892	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	Uncharacterized protein.	0.970
ripk1	LOC109996590	ENSLBEP00000022169	ENSLBEP00000023058	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.963
ripk1	LOC109998212	ENSLBEP00000022169	ENSLBEP00000020099	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	Baculoviral IAP repeat containing 2.	0.953
ripk1	tradd	ENSLBEP00000022169	ENSLBEP00000032329	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	Tnfrsf1a-associated via death domain.	0.996
tradd	ENSLBEP00000008892	ENSLBEP00000032329	ENSLBEP00000008892	Tnfrsf1a-associated via death domain.	Uncharacterized protein.	0.996
tradd	LOC109996590	ENSLBEP00000032329	ENSLBEP00000023058	Tnfrsf1a-associated via death domain.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.989
tradd	LOC109998212	ENSLBEP00000032329	ENSLBEP00000020099	Tnfrsf1a-associated via death domain.	Baculoviral IAP repeat containing 2.	0.986
tradd	ripk1	ENSLBEP00000032329	ENSLBEP00000022169	Tnfrsf1a-associated via death domain.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.996