(35 nodes) DNA packaging complex network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_193240	SMC flexible hinge domain protein, putative. (1135 aa)
	TVAG_206340	Uncharacterized protein. (544 aa)
	TVAG_109370	Bromodomain containing protein. (285 aa)
	TVAG_060320	Uncharacterized protein. (389 aa)
	TVAG_056570	Cnd1 domain-containing protein. (1059 aa)
	TVAG_333960	SMC family, C-terminal domain containing protein. (1095 aa)
	TVAG_224460	Histone H3.2, putative. (154 aa)
	TVAG_495500	Actin family protein; Belongs to the actin family. (394 aa)
	TVAG_340870	SMC flexible hinge domain protein, putative. (1155 aa)
	TVAG_447860	Histone H2A; Belongs to the histone H2A family. (139 aa)
	TVAG_297540	N terminus of Rad21 / Rec8 like protein. (486 aa)
	TVAG_266830	SMC family, C-terminal domain containing protein. (953 aa)
	TVAG_266820	RecF/RecN/SMC N terminal domain containing protein. (177 aa)
	TVAG_122920	Cnd1 domain-containing protein. (1127 aa)
	TVAG_026390	Histone H2B; Belongs to the histone H2B family. (129 aa)
	TVAG_021440	Histone H2A; Belongs to the histone H2A family. (139 aa)
	TVAG_380390	Uncharacterized protein. (905 aa)
	TVAG_014910	Histone H3-1. (138 aa)
	TVAG_391590	XYPPX repeat family protein. (496 aa)
	TVAG_185390	Histone H3, embryonic, putative. (134 aa)
	TVAG_313860	SMC flexible hinge domain protein, putative. (1169 aa)
	TVAG_100580	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
	TVAG_454360	EF hand family protein. (828 aa)
	TVAG_345010	EF hand family protein. (927 aa)
	TVAG_330740	Cnd1 domain-containing protein. (1131 aa)
	TVAG_162180	SMC family, C-terminal domain containing protein. (1118 aa)
	TVAG_304290	Uncharacterized protein. (309 aa)
	TVAG_005670	EF hand family protein. (925 aa)
	TVAG_321390	Histone H2B, testis, putative; Belongs to the histone H2B family. (66 aa)
	TVAG_208250	EF hand family protein. (922 aa)
	TVAG_105970	Histone H2A; Belongs to the histone H2A family. (139 aa)
	TVAG_087830	Histone H3-1, putative. (138 aa)
	TVAG_452800	Uncharacterized protein. (495 aa)
	TVAG_527160	EF hand family protein. (918 aa)
	TVAG_014920	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_005670	TVAG_014920	A2FHQ2	Q27875	EF hand family protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.569
TVAG_005670	TVAG_026390	A2FHQ2	A2DJ26	EF hand family protein.	Histone H2B; Belongs to the histone H2B family.	0.494
TVAG_005670	TVAG_100580	A2FHQ2	A2ENN5	EF hand family protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.569
TVAG_005670	TVAG_162180	A2FHQ2	A2FBW6	EF hand family protein.	SMC family, C-terminal domain containing protein.	0.941
TVAG_005670	TVAG_193240	A2FHQ2	A2DH38	EF hand family protein.	SMC flexible hinge domain protein, putative.	0.934
TVAG_005670	TVAG_266820	A2FHQ2	A2DQN5	EF hand family protein.	RecF/RecN/SMC N terminal domain containing protein.	0.941
TVAG_005670	TVAG_266830	A2FHQ2	A2DQN6	EF hand family protein.	SMC family, C-terminal domain containing protein.	0.941
TVAG_005670	TVAG_313860	A2FHQ2	A2EKI4	EF hand family protein.	SMC flexible hinge domain protein, putative.	0.902
TVAG_005670	TVAG_321390	A2FHQ2	A2FK62	EF hand family protein.	Histone H2B, testis, putative; Belongs to the histone H2B family.	0.494
TVAG_005670	TVAG_333960	A2FHQ2	A2EIA2	EF hand family protein.	SMC family, C-terminal domain containing protein.	0.934
TVAG_005670	TVAG_340870	A2FHQ2	A2DTP6	EF hand family protein.	SMC flexible hinge domain protein, putative.	0.934
TVAG_014910	TVAG_014920	A2DGG3	Q27875	Histone H3-1.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.993
TVAG_014910	TVAG_021440	A2DGG3	A2DHC5	Histone H3-1.	Histone H2A; Belongs to the histone H2A family.	0.945
TVAG_014910	TVAG_026390	A2DGG3	A2DJ26	Histone H3-1.	Histone H2B; Belongs to the histone H2B family.	0.959
TVAG_014910	TVAG_056570	A2DGG3	A2ECL6	Histone H3-1.	Cnd1 domain-containing protein.	0.619
TVAG_014910	TVAG_100580	A2DGG3	A2ENN5	Histone H3-1.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.993
TVAG_014910	TVAG_105970	A2DGG3	A2G271	Histone H3-1.	Histone H2A; Belongs to the histone H2A family.	0.945
TVAG_014910	TVAG_109370	A2DGG3	A2EAC6	Histone H3-1.	Bromodomain containing protein.	0.928
TVAG_014910	TVAG_122920	A2DGG3	A2DN49	Histone H3-1.	Cnd1 domain-containing protein.	0.619
TVAG_014910	TVAG_162180	A2DGG3	A2FBW6	Histone H3-1.	SMC family, C-terminal domain containing protein.	0.728