STRINGSTRING
EDC28_10643 EDC28_10643 EDC28_10642 EDC28_10642 EDC28_10641 EDC28_10641 EDC28_10640 EDC28_10640 EDC28_10639 EDC28_10639 EDC28_10638 EDC28_10638 EDC28_10637 EDC28_10637 sucC sucC sucD sucD EDC28_104286 EDC28_104286 GCA_001247655_01200 GCA_001247655_01200 pdhA pdhA EDC28_10254 EDC28_10254 EDC28_10253 EDC28_10253 EDC28_10195 EDC28_10195 EDC28_104357 EDC28_104357 EDC28_10116 EDC28_10116 pckA pckA EDC28_101438 EDC28_101438 EDC28_101437 EDC28_101437 EDC28_101436 EDC28_101436 EDC28_101428 EDC28_101428 mdh mdh EDC28_106304 EDC28_106304 EDC28_106155 EDC28_106155
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EDC28_10643Unannotated protein; Belongs to the citrate synthase family. (426 aa)
EDC28_10642Unannotated protein. (92 aa)
EDC28_10641Unannotated protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). (115 aa)
EDC28_10640Unannotated protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (573 aa)
EDC28_10639Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (235 aa)
EDC28_10638Unannotated protein. (938 aa)
EDC28_10637Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (399 aa)
sucCUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (388 aa)
sucDUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (290 aa)
EDC28_104286Unannotated protein. (688 aa)
GCA_001247655_01200Unannotated protein. (662 aa)
pdhAUnannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (367 aa)
EDC28_10254Unannotated protein. (327 aa)
EDC28_10253Unannotated protein. (368 aa)
EDC28_10195Unannotated protein. (485 aa)
EDC28_104357Unannotated protein; Belongs to the monomeric-type IDH family. (742 aa)
EDC28_10116Unannotated protein. (87 aa)
pckAUnannotated protein; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. (533 aa)
EDC28_101438Unannotated protein; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (888 aa)
EDC28_101437Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (647 aa)
EDC28_101436Unannotated protein. (474 aa)
EDC28_101428Unannotated protein; Belongs to the aconitase/IPM isomerase family. (865 aa)
mdhUnannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. (313 aa)
EDC28_106304Unannotated protein. (453 aa)
EDC28_106155Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (503 aa)
Your Current Organism:
Gallaecimonas pentaromativorans
NCBI taxonomy Id: 584787
Other names: CECT 7479, DSM 21945, G. pentaromativorans, Gallaecimonas pentaromativorans Rodriguez-Blanco et al. 2010, gamma proteobacterium CEE_131, strain CEE_131
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