STRINGSTRING
EDC28_106274 EDC28_106274 EDC28_106270 EDC28_106270 GCA_001247655_00541 GCA_001247655_00541 EDC28_102440 EDC28_102440 EDC28_104302 EDC28_104302 rraA rraA nqrF nqrF EDC28_103484 EDC28_103484 EDC28_10295 EDC28_10295 EDC28_101110 EDC28_101110 EDC28_101146 EDC28_101146 fadB fadB fadA fadA EDC28_106118 EDC28_106118 EDC28_104133 EDC28_104133 EDC28_10323 EDC28_10323 EDC28_10572 EDC28_10572 EDC28_102171 EDC28_102171 EDC28_102275 EDC28_102275 fadI fadI EDC28_11159 EDC28_11159 EDC28_101439 EDC28_101439 EDC28_108155 EDC28_108155
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EDC28_106274Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
EDC28_106270Unannotated protein. (369 aa)
GCA_001247655_00541Unannotated protein. (131 aa)
EDC28_102440Unannotated protein. (185 aa)
EDC28_104302Unannotated protein. (185 aa)
rraAUnannotated protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome. (161 aa)
nqrFUnannotated protein; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (407 aa)
EDC28_103484Unannotated protein. (247 aa)
EDC28_10295Unannotated protein. (290 aa)
EDC28_101110Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
EDC28_101146Unannotated protein. (297 aa)
fadBUnannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (716 aa)
fadAUnannotated protein; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. (388 aa)
EDC28_106118Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (153 aa)
EDC28_104133Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (404 aa)
EDC28_10323Unannotated protein. (131 aa)
EDC28_10572Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (178 aa)
EDC28_102171Unannotated protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (159 aa)
EDC28_102275Unannotated protein; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (716 aa)
fadIUnannotated protein; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. (437 aa)
EDC28_11159Unannotated protein. (454 aa)
EDC28_101439Unannotated protein. (259 aa)
EDC28_108155Unannotated protein. (150 aa)
Your Current Organism:
Gallaecimonas pentaromativorans
NCBI taxonomy Id: 584787
Other names: CECT 7479, DSM 21945, G. pentaromativorans, Gallaecimonas pentaromativorans Rodriguez-Blanco et al. 2010, gamma proteobacterium CEE_131, strain CEE_131
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