STRINGSTRING
PMM0025 PMM0025 PMM0061 PMM0061 PMM0101 PMM0101 crtQ crtQ crtB,pys crtB,pys pds,crtD pds,crtD PMM0148 PMM0148 rub rub PMM0296 PMM0296 psb27 psb27 PMM0528 PMM0528 PMM0529 PMM0529 PMM0605 PMM0605 lepB-2 lepB-2 PMM0620 PMM0620 crtL2 crtL2 hisZ hisZ PMM0903 PMM0903 PMM0904 PMM0904 PMM0905 PMM0905 PMM0944 PMM0944 crtL1 crtL1 petH petH PMM1076 PMM1076 crtH crtH crtR crtR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PMM0025Cyclophilin-type peptidyl-prolyl cis-trans isomerase; Alternative locus ID: PMED4_00241. (363 aa)
PMM0061YGGT family, conserved hypothetical integral membrane protein; Alternative locus ID: PMED4_00631. (101 aa)
PMM0101Conserved hypothetical protein; Alternative locus ID: PMED4_01061. (311 aa)
crtQZeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (484 aa)
crtB,pysSqualene and phytoene synthases; Alternative locus ID: PMED4_01491. (302 aa)
pds,crtDPhytoene desaturase; Alternative locus ID: PMED4_01501. (473 aa)
PMM0148Conserved hypothetical protein; Alternative locus ID: PMED4_01541. (242 aa)
rubProbable rubredoxin; Alternative locus ID: PMED4_03001. (142 aa)
PMM0296Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (337 aa)
psb27Possible Photosystem II reaction center Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster. (145 aa)
PMM0528DUF152; Alternative locus ID: PMED4_05771; Belongs to the multicopper oxidase YfiH/RL5 family. (260 aa)
PMM0529Conserved hypothetical protein; Alternative locus ID: PMED4_05781. (301 aa)
PMM0605Conserved hypothetical protein; Alternative locus ID: PMED4_06541. (112 aa)
lepB-2Leader peptidase I; Alternative locus ID: PMED4_06551; Belongs to the peptidase S26 family. (194 aa)
PMM0620Conserved hypothetical protein; Alternative locus ID: PMED4_06691. (240 aa)
crtL2Putative lycopene epsilon cyclase; Alternative locus ID: PMED4_06831. (427 aa)
hisZPossible Histidyl-tRNA synthetase; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine (By similarity). (383 aa)
PMM0903Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein; Alternative locus ID: PMED4_10141. (177 aa)
PMM0904Conserved hypothetical protein; Alternative locus ID: PMED4_10151. (100 aa)
PMM0905Conserved hypothetical protein; Alternative locus ID: PMED4_10161. (111 aa)
PMM0944Conserved hypothetical protein; Alternative locus ID: PMED4_10551. (148 aa)
crtL1Putative lycopene beta cyclase; Alternative locus ID: PMED4_12101. (403 aa)
petHferredoxin-NADP oxidoreductase (FNR); Alternative locus ID: PMED4_12211. (370 aa)
PMM1076Conserved hypothetical protein; Alternative locus ID: PMED4_12221. (178 aa)
crtHPutative carotenoid isomerase; Alternative locus ID: PMED4_12611. (533 aa)
crtRBeta carotene hydroxylase. (260 aa)
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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