(5 nodes) Mixed, incl. MA3 domain, and Saf4/Yju2 protein network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_08698	WD_REPEATS_REGION domain-containing protein. (559 aa)
	T265_07501	MI domain-containing protein. (936 aa)
	T265_06774	Uncharacterized protein. (268 aa)
	T265_05348	Uncharacterized protein. (335 aa)
	T265_12762	Uncharacterized protein. (1330 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_05348	T265_06774	A0A074ZP88	A0A074ZJA9	Uncharacterized protein.	Uncharacterized protein.	0.992
T265_05348	T265_07501	A0A074ZP88	A0A074ZGY3	Uncharacterized protein.	MI domain-containing protein.	0.987
T265_05348	T265_08698	A0A074ZP88	A0A074ZCS1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
T265_05348	T265_12762	A0A074ZP88	A0A075A0D0	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_06774	T265_05348	A0A074ZJA9	A0A074ZP88	Uncharacterized protein.	Uncharacterized protein.	0.992
T265_06774	T265_07501	A0A074ZJA9	A0A074ZGY3	Uncharacterized protein.	MI domain-containing protein.	0.985
T265_06774	T265_08698	A0A074ZJA9	A0A074ZCS1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
T265_06774	T265_12762	A0A074ZJA9	A0A075A0D0	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_07501	T265_05348	A0A074ZGY3	A0A074ZP88	MI domain-containing protein.	Uncharacterized protein.	0.987
T265_07501	T265_06774	A0A074ZGY3	A0A074ZJA9	MI domain-containing protein.	Uncharacterized protein.	0.985
T265_07501	T265_08698	A0A074ZGY3	A0A074ZCS1	MI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
T265_07501	T265_12762	A0A074ZGY3	A0A075A0D0	MI domain-containing protein.	Uncharacterized protein.	0.987
T265_08698	T265_05348	A0A074ZCS1	A0A074ZP88	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
T265_08698	T265_06774	A0A074ZCS1	A0A074ZJA9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
T265_08698	T265_07501	A0A074ZCS1	A0A074ZGY3	WD_REPEATS_REGION domain-containing protein.	MI domain-containing protein.	0.999
T265_08698	T265_12762	A0A074ZCS1	A0A075A0D0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
T265_12762	T265_05348	A0A075A0D0	A0A074ZP88	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_12762	T265_06774	A0A075A0D0	A0A074ZJA9	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_12762	T265_07501	A0A075A0D0	A0A074ZGY3	Uncharacterized protein.	MI domain-containing protein.	0.987
T265_12762	T265_08698	A0A075A0D0	A0A074ZCS1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999