STRINGSTRING
sma-5 sma-5 dbl-1 dbl-1 sma-1 sma-1 sma-4 sma-4 spe-10 spe-10 sma-3 sma-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sma-5Protein CBR-SMA-5; Belongs to the protein kinase superfamily. (491 aa)
dbl-1Protein CBR-DBL-1. (373 aa)
sma-1Protein CBR-SMA-1. (4156 aa)
sma-4Dwarfin sma. (603 aa)
spe-10Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (365 aa)
sma-3Dwarfin sma. (365 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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