(11 nodes) 2-oxoglutarate-dependent dioxygenase activity network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GGF0_TUBMM	Uncharacterized protein. (211 aa)
	D5GF69_TUBMM	JmjC domain-containing protein. (1166 aa)
	D5GCY9_TUBMM	Fe2OG dioxygenase domain-containing protein. (661 aa)
	D5GEV3_TUBMM	JmjC domain-containing protein. (147 aa)
	D5GF04_TUBMM	JmjC domain-containing protein. (331 aa)
	D5G5S4_TUBMM	Uncharacterized protein. (459 aa)
	D5GA43_TUBMM	2OG-FeII_Oxy_2 domain-containing protein. (292 aa)
	D5GBT7_TUBMM	Uncharacterized protein. (463 aa)
	D5GP65_TUBMM	Uncharacterized protein. (1697 aa)
	D5G7G8_TUBMM	Uncharacterized protein. (1134 aa)
	D5GID0_TUBMM	Uncharacterized protein. (846 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G7G8_TUBMM	D5GF69_TUBMM	D5G7G8	D5GF69	Uncharacterized protein.	JmjC domain-containing protein.	0.618
D5G7G8_TUBMM	D5GID0_TUBMM	D5G7G8	D5GID0	Uncharacterized protein.	Uncharacterized protein.	0.706
D5G7G8_TUBMM	D5GP65_TUBMM	D5G7G8	D5GP65	Uncharacterized protein.	Uncharacterized protein.	0.788
D5GBT7_TUBMM	D5GF69_TUBMM	D5GBT7	D5GF69	Uncharacterized protein.	JmjC domain-containing protein.	0.440
D5GBT7_TUBMM	D5GP65_TUBMM	D5GBT7	D5GP65	Uncharacterized protein.	Uncharacterized protein.	0.429
D5GF04_TUBMM	D5GP65_TUBMM	D5GF04	D5GP65	JmjC domain-containing protein.	Uncharacterized protein.	0.443
D5GF69_TUBMM	D5G7G8_TUBMM	D5GF69	D5G7G8	JmjC domain-containing protein.	Uncharacterized protein.	0.618
D5GF69_TUBMM	D5GBT7_TUBMM	D5GF69	D5GBT7	JmjC domain-containing protein.	Uncharacterized protein.	0.440
D5GF69_TUBMM	D5GP65_TUBMM	D5GF69	D5GP65	JmjC domain-containing protein.	Uncharacterized protein.	0.681
D5GID0_TUBMM	D5G7G8_TUBMM	D5GID0	D5G7G8	Uncharacterized protein.	Uncharacterized protein.	0.706
D5GID0_TUBMM	D5GP65_TUBMM	D5GID0	D5GP65	Uncharacterized protein.	Uncharacterized protein.	0.535
D5GP65_TUBMM	D5G7G8_TUBMM	D5GP65	D5G7G8	Uncharacterized protein.	Uncharacterized protein.	0.788
D5GP65_TUBMM	D5GBT7_TUBMM	D5GP65	D5GBT7	Uncharacterized protein.	Uncharacterized protein.	0.429
D5GP65_TUBMM	D5GF04_TUBMM	D5GP65	D5GF04	Uncharacterized protein.	JmjC domain-containing protein.	0.443
D5GP65_TUBMM	D5GF69_TUBMM	D5GP65	D5GF69	Uncharacterized protein.	JmjC domain-containing protein.	0.681
D5GP65_TUBMM	D5GID0_TUBMM	D5GP65	D5GID0	Uncharacterized protein.	Uncharacterized protein.	0.535