(59 nodes) The canonical retinoid cycle in rods (twilight vision), and Aminotransferase class I and II network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_00083	Uncharacterized protein. (531 aa)
	FOXB_00294	Uncharacterized protein. (259 aa)
	FOXB_00308	Uncharacterized protein. (338 aa)
	FOXB_00703	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (337 aa)
	FOXB_00797	Uncharacterized protein. (257 aa)
	FOXB_01006	Uncharacterized protein. (339 aa)
	FOXB_01339	ADH_N domain-containing protein. (453 aa)
	FOXB_01530	Uncharacterized protein. (341 aa)
	FOXB_01605	Uncharacterized protein. (379 aa)
	FOXB_01847	Uncharacterized protein. (306 aa)
	FOXB_02144	Uncharacterized protein. (618 aa)
	FOXB_02324	PALP domain-containing protein. (340 aa)
	FOXB_02793	Uncharacterized protein. (331 aa)
	FOXB_03464	Uncharacterized protein. (331 aa)
	FOXB_03522	Uncharacterized protein. (599 aa)
	FOXB_03914	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (332 aa)
	FOXB_04111	Uncharacterized protein. (248 aa)
	FOXB_04199	Uncharacterized protein. (325 aa)
	FOXB_04256	Uncharacterized protein. (1135 aa)
	FOXB_04853	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (316 aa)
	FOXB_05539	Aminotran_1_2 domain-containing protein. (427 aa)
	FOXB_06006	Uncharacterized protein. (323 aa)
	FOXB_07631	Uncharacterized protein. (451 aa)
	FOXB_07796	DUF1996 domain-containing protein. (323 aa)
	FOXB_07946	Uncharacterized protein. (331 aa)
	FOXB_08347	PALP domain-containing protein. (577 aa)
	FOXB_08348	Uncharacterized protein. (358 aa)
	FOXB_09160	Aminotran_1_2 domain-containing protein. (285 aa)
	FOXB_09790	Uncharacterized protein. (340 aa)
	FOXB_09807	Uncharacterized protein. (303 aa)
	FOXB_10282	Uncharacterized protein. (327 aa)
	FOXB_10587	Uncharacterized protein. (332 aa)
	FOXB_11224	Uncharacterized protein. (317 aa)
	FOXB_11408	Uncharacterized protein. (293 aa)
	FOXB_11542	Uncharacterized protein. (316 aa)
	FOXB_11709	Uncharacterized protein. (368 aa)
	FOXB_12256	Aminotran_1_2 domain-containing protein. (423 aa)
	FOXB_12318	Uncharacterized protein. (339 aa)
	FOXB_12724	Uncharacterized protein. (313 aa)
	FOXB_12791	Aminotran_1_2 domain-containing protein. (417 aa)
	FOXB_13385	Uncharacterized protein. (339 aa)
	FOXB_13448	Uncharacterized protein. (310 aa)
	FOXB_13918	Uncharacterized protein. (275 aa)
	FOXB_14168	Uncharacterized protein. (300 aa)
	FOXB_14176	Protein kinase domain-containing protein. (1182 aa)
	FOXB_14243	Aminotran_1_2 domain-containing protein. (423 aa)
	FOXB_14332	Uncharacterized protein. (485 aa)
	FOXB_14943	Uncharacterized protein. (362 aa)
	FOXB_14949	Uncharacterized protein. (570 aa)
	FOXB_15075	Uncharacterized protein. (584 aa)
	FOXB_15398	Uncharacterized protein. (332 aa)
	FOXB_15979	Amidohydro-rel domain-containing protein. (512 aa)
	FOXB_16550	Cellulase domain-containing protein. (754 aa)
	FOXB_16940	Uncharacterized protein. (332 aa)
	FOXB_16973	Uncharacterized protein. (330 aa)
	FOXB_17045	Uncharacterized protein. (361 aa)
	FOXB_17410	Uncharacterized protein. (523 aa)
	FOXB_17747	DDE_Tnp_1_7 domain-containing protein. (423 aa)
	FOXB_17766	Uncharacterized protein. (277 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00308	FOXB_00703	F9F1N4	F9F2S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.486
FOXB_00308	FOXB_00797	F9F1N4	F9F322	Uncharacterized protein.	Uncharacterized protein.	0.489
FOXB_00308	FOXB_01605	F9F1N4	F9F5D0	Uncharacterized protein.	Uncharacterized protein.	0.510
FOXB_00308	FOXB_03522	F9F1N4	F9FAU6	Uncharacterized protein.	Uncharacterized protein.	0.556
FOXB_00308	FOXB_03914	F9F1N4	F9FBY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.481
FOXB_00308	FOXB_07946	F9F1N4	F9FNG6	Uncharacterized protein.	Uncharacterized protein.	0.438
FOXB_00308	FOXB_10587	F9F1N4	F9FW06	Uncharacterized protein.	Uncharacterized protein.	0.460
FOXB_00308	FOXB_12724	F9F1N4	F9G242	Uncharacterized protein.	Uncharacterized protein.	0.591
FOXB_00308	FOXB_16940	F9F1N4	F9GE56	Uncharacterized protein.	Uncharacterized protein.	0.464
FOXB_00703	FOXB_00308	F9F2S8	F9F1N4	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.486
FOXB_00703	FOXB_01530	F9F2S8	F9F555	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.452
FOXB_00703	FOXB_02144	F9F2S8	F9F6W9	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.440
FOXB_00703	FOXB_15075	F9F2S8	F9G8U3	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.474
FOXB_00797	FOXB_00308	F9F322	F9F1N4	Uncharacterized protein.	Uncharacterized protein.	0.489
FOXB_00797	FOXB_01530	F9F322	F9F555	Uncharacterized protein.	Uncharacterized protein.	0.457
FOXB_00797	FOXB_02144	F9F322	F9F6W9	Uncharacterized protein.	Uncharacterized protein.	0.462
FOXB_00797	FOXB_03464	F9F322	F9FAN8	Uncharacterized protein.	Uncharacterized protein.	0.458
FOXB_00797	FOXB_06006	F9F322	F9FHX7	Uncharacterized protein.	Uncharacterized protein.	0.472
FOXB_00797	FOXB_08348	F9F322	F9FPL8	Uncharacterized protein.	Uncharacterized protein.	0.421
FOXB_00797	FOXB_12318	F9F322	F9G0Y6	Uncharacterized protein.	Uncharacterized protein.	0.477