(9 nodes) Mixed, incl. L28p-like, and Large ribosomal subunit rRNA binding network (Spirosoma endophyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplS	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (125 aa)
	rpsP	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (307 aa)
	rpmG	Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (61 aa)
	rpsI	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (128 aa)
	rpmE2	LSU ribosomal protein L31P. (93 aa)
	rpsT	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
	rpmB	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (79 aa)
	rplK	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (147 aa)
	rplJ	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (177 aa)

Your Current Organism:

Spirosoma endophyticum

NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplJ	rplK	SAMN05216167_116112	SAMN05216167_116110	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplJ	rplS	SAMN05216167_116112	SAMN05216167_1011008	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplJ	rpmB	SAMN05216167_116112	SAMN05216167_11053	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplJ	rpmE2	SAMN05216167_116112	SAMN05216167_104493	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L31P.	0.999
rplJ	rpmG	SAMN05216167_116112	SAMN05216167_103235	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
rplJ	rpsI	SAMN05216167_116112	SAMN05216167_103353	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplJ	rpsP	SAMN05216167_116112	SAMN05216167_1011035	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplJ	rpsT	SAMN05216167_116112	SAMN05216167_110163	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.999
rplK	rplJ	SAMN05216167_116110	SAMN05216167_116112	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rplK	rplS	SAMN05216167_116110	SAMN05216167_1011008	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplK	rpmB	SAMN05216167_116110	SAMN05216167_11053	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplK	rpmE2	SAMN05216167_116110	SAMN05216167_104493	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L31P.	0.999
rplK	rpmG	SAMN05216167_116110	SAMN05216167_103235	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
rplK	rpsI	SAMN05216167_116110	SAMN05216167_103353	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplK	rpsP	SAMN05216167_116110	SAMN05216167_1011035	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplK	rpsT	SAMN05216167_116110	SAMN05216167_110163	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.999
rplS	rplJ	SAMN05216167_1011008	SAMN05216167_116112	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rplS	rplK	SAMN05216167_1011008	SAMN05216167_116110	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplS	rpmB	SAMN05216167_1011008	SAMN05216167_11053	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplS	rpmE2	SAMN05216167_1011008	SAMN05216167_104493	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L31P.	0.999

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