40 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_12405	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (731 aa)
	TCAL_06785	dNK domain-containing protein. (459 aa)
	TCAL_06601	Uncharacterized protein. (313 aa)
	TCAL_06478	Uncharacterized protein; Belongs to the complex I 49 kDa subunit family. (474 aa)
	TCAL_07308	Uncharacterized protein. (196 aa)
	TCAL_00157	Uncharacterized protein. (126 aa)
	TCAL_03847	Uncharacterized protein. (92 aa)
	TCAL_05680	Uncharacterized protein. (292 aa)
	TCAL_04518	Uncharacterized protein. (289 aa)
	TCAL_06393	Uncharacterized protein. (160 aa)
	TCAL_08370	Uncharacterized protein. (244 aa)
	TCAL_01585	Uncharacterized protein. (180 aa)
	TCAL_01568	CIA30 domain-containing protein. (356 aa)
	TCAL_05478	Uncharacterized protein. (186 aa)
	TCAL_02241	Uncharacterized protein. (212 aa)
	TCAL_09109	Epimerase domain-containing protein. (441 aa)
	TCAL_03116	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (516 aa)
	TCAL_12453	Uncharacterized protein. (189 aa)
	TCAL_02370	zf-CHCC domain-containing protein. (121 aa)
	TCAL_17333	Uncharacterized protein. (91 aa)
	TCAL_05445	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (139 aa)
	TCAL_13329	Uncharacterized protein. (174 aa)
	TCAL_06837	Uncharacterized protein; Belongs to the complex I LYR family. (124 aa)
	TCAL_04131	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (188 aa)
	TCAL_05883	Uncharacterized protein. (161 aa)
	TCAL_02758	ECSIT_Cterm domain-containing protein. (295 aa)
	TCAL_05872	Uncharacterized protein. (269 aa)
	TCAL_00807	Uncharacterized protein. (191 aa)
	TCAL_00848	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (225 aa)
	TCAL_00849	Uncharacterized protein. (193 aa)
	TCAL_16654	Uncharacterized protein. (133 aa)
	TCAL_08202	Uncharacterized protein. (215 aa)
	TCAL_14175	Uncharacterized protein. (120 aa)
	TCAL_00348	L51_S25_CI-B8 domain-containing protein. (92 aa)
	TCAL_00350	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (408 aa)
	TCAL_10348	Uncharacterized protein. (216 aa)
	TCAL_00331	Uncharacterized protein. (152 aa)
	TCAL_09098	Uncharacterized protein. (120 aa)
	TCAL_04173	Uncharacterized protein. (194 aa)
	TCAL_01480	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family. (273 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00157	TCAL_00331	A0A553PG97	A0A553NAU6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_00348	A0A553PG97	A0A553NC36	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.999
TCAL_00157	TCAL_00350	A0A553PG97	A0A553NBR1	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.671
TCAL_00157	TCAL_00807	A0A553PG97	A0A553NFE5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_00848	A0A553PG97	A0A553NFC5	Uncharacterized protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
TCAL_00157	TCAL_00849	A0A553PG97	A0A553NFA6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_01480	A0A553PG97	A0A553N6Z3	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
TCAL_00157	TCAL_01568	A0A553PG97	A0A553P8I7	Uncharacterized protein.	CIA30 domain-containing protein.	0.807
TCAL_00157	TCAL_01585	A0A553PG97	A0A553P8T8	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_02241	A0A553PG97	A0A553P6Q6	Uncharacterized protein.	Uncharacterized protein.	0.598
TCAL_00157	TCAL_02370	A0A553PG97	A0A553P0F0	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.999
TCAL_00157	TCAL_02758	A0A553PG97	A0A553NPF7	Uncharacterized protein.	ECSIT_Cterm domain-containing protein.	0.451
TCAL_00157	TCAL_03116	A0A553PG97	A0A553P4I8	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
TCAL_00157	TCAL_03847	A0A553PG97	A0A553PFD8	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_04131	A0A553PG97	A0A553NTU6	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
TCAL_00157	TCAL_04173	A0A553PG97	A0A553N816	Uncharacterized protein.	Uncharacterized protein.	0.825
TCAL_00157	TCAL_04518	A0A553PG97	A0A553PB33	Uncharacterized protein.	Uncharacterized protein.	0.736
TCAL_00157	TCAL_05445	A0A553PG97	A0A553NXF8	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.997
TCAL_00157	TCAL_05478	A0A553PG97	A0A553P750	Uncharacterized protein.	Uncharacterized protein.	0.943
TCAL_00157	TCAL_05872	A0A553PG97	A0A553NNU2	Uncharacterized protein.	Uncharacterized protein.	0.999