(27 nodes) Organelle localization network (Plasmodium yoelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PY02378	t-SNARE coiled-coil homology domain-containing protein. (252 aa)
	PY07410	Syntaxin 5. (173 aa)
	PY07007	Syntaxin 5. (140 aa)
	PY07006	Uncharacterized protein. (78 aa)
	PY06123	Uncharacterized protein. (856 aa)
	PY05256	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (94 aa)
	PY05177	t-SNARE coiled-coil homology domain-containing protein. (86 aa)
	PY05107	Syntaxin binding protein 1; Belongs to the STXBP/unc-18/SEC1 family. (640 aa)
	PY04789	Myosin va; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (472 aa)
	PY04374	Expressed protein. (1097 aa)
	PY04219	68 kDa protein. (663 aa)
	PY04059	t-SNARE coiled-coil homology domain-containing protein. (395 aa)
	PY03828	ADP-ribosylation factor GTPase-activating protein. (296 aa)
	PY03571	t-SNARE coiled-coil homology domain-containing protein. (326 aa)
	PY03484	t-SNARE coiled-coil homology domain-containing protein. (333 aa)
	PY03137	Uncharacterized protein. (550 aa)
	PY03107	Vacuolar membrane protein pep3. (1399 aa)
	PY02377	Uncharacterized protein. (100 aa)
	PY01957	Uncharacterized protein. (503 aa)
	PY01811	t-SNARE coiled-coil homology domain-containing protein. (177 aa)
	PY01474	NMD3 domain-containing protein. (938 aa)
	PY01468	Cytoplasmic dynein 1-related. (5054 aa)
	PY01232	Myosin-A; Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). (817 aa)
	PY01027	Drosophila melanogaster LD33051p. (939 aa)
	PY00816	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (231 aa)
	PY00471	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (494 aa)
	PY00381	Zinc finger protein Glo3-like, putative. (434 aa)

Your Current Organism:

Plasmodium yoelii

NCBI taxonomy Id: 73239
Other names: P. yoelii yoelii, Plasmodium yoelii subsp. yoelii, Plasmodium yoelii yoelii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PY00381	PY00471	Q7RSH6	Q7RS92	Zinc finger protein Glo3-like, putative.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.898
PY00381	PY03828	Q7RSH6	Q7RI03	Zinc finger protein Glo3-like, putative.	ADP-ribosylation factor GTPase-activating protein.	0.998
PY00471	PY00381	Q7RS92	Q7RSH6	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Zinc finger protein Glo3-like, putative.	0.898
PY00471	PY03828	Q7RS92	Q7RI03	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	ADP-ribosylation factor GTPase-activating protein.	0.898
PY00471	PY05107	Q7RS92	Q7REF8	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Syntaxin binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.527
PY00471	PY07006	Q7RS92	Q7R960	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein.	0.571
PY00471	PY07007	Q7RS92	Q7R959	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Syntaxin 5.	0.571
PY00471	PY07410	Q7RS92	Q7R813	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Syntaxin 5.	0.571
PY00816	PY01027	Q7RRB5	Q7RQR5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Drosophila melanogaster LD33051p.	0.596
PY00816	PY01474	Q7RRB5	Q7RPI5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	NMD3 domain-containing protein.	0.677
PY00816	PY03137	Q7RRB5	Q7RJW8	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.711
PY01027	PY00816	Q7RQR5	Q7RRB5	Drosophila melanogaster LD33051p.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.596
PY01027	PY01474	Q7RQR5	Q7RPI5	Drosophila melanogaster LD33051p.	NMD3 domain-containing protein.	0.741
PY01027	PY03137	Q7RQR5	Q7RJW8	Drosophila melanogaster LD33051p.	Uncharacterized protein.	0.854
PY01474	PY00816	Q7RPI5	Q7RRB5	NMD3 domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.677
PY01474	PY01027	Q7RPI5	Q7RQR5	NMD3 domain-containing protein.	Drosophila melanogaster LD33051p.	0.741
PY01474	PY03137	Q7RPI5	Q7RJW8	NMD3 domain-containing protein.	Uncharacterized protein.	0.903
PY01474	PY04219	Q7RPI5	Q7RGX7	NMD3 domain-containing protein.	68 kDa protein.	0.446
PY01811	PY02377	Q7RNK5	Q7RM11	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.785
PY01811	PY02378	Q7RNK5	Q7RM10	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.785