(7 nodes) Mixed, incl. Actin rod assembly, and Hindbrain structural organization network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000006514	annotation not available (150 aa)
	dnajc10	DnaJ homolog subfamily C member 10. (799 aa)
	ENSSGRP00000016144	Heat shock protein 90kDa beta. (639 aa)
	LOC107567952	Endoplasmic reticulum chaperone BiP. (675 aa)
	LOC107572500	78 kDa glucose-regulated protein-like. (657 aa)
	LOC107601604	DnaJ homolog subfamily C member 10-like. (738 aa)
	ENSSGRP00000092420	Heat shock protein 90kDa beta. (675 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006514	ENSSGRP00000016144	ENSSGRP00000006514	ENSSGRP00000016144	annotation not available	Heat shock protein 90kDa beta.	0.901
ENSSGRP00000006514	ENSSGRP00000092420	ENSSGRP00000006514	ENSSGRP00000092420	annotation not available	Heat shock protein 90kDa beta.	0.901
ENSSGRP00000006514	LOC107567952	ENSSGRP00000006514	ENSSGRP00000029975	annotation not available	Endoplasmic reticulum chaperone BiP.	0.816
ENSSGRP00000006514	LOC107572500	ENSSGRP00000006514	ENSSGRP00000035858	annotation not available	78 kDa glucose-regulated protein-like.	0.816
ENSSGRP00000006514	LOC107601604	ENSSGRP00000006514	ENSSGRP00000053912	annotation not available	DnaJ homolog subfamily C member 10-like.	0.804
ENSSGRP00000006514	dnajc10	ENSSGRP00000006514	ENSSGRP00000011839	annotation not available	DnaJ homolog subfamily C member 10.	0.804
ENSSGRP00000016144	ENSSGRP00000006514	ENSSGRP00000016144	ENSSGRP00000006514	Heat shock protein 90kDa beta.	annotation not available	0.901
ENSSGRP00000016144	ENSSGRP00000092420	ENSSGRP00000016144	ENSSGRP00000092420	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.900
ENSSGRP00000016144	LOC107567952	ENSSGRP00000016144	ENSSGRP00000029975	Heat shock protein 90kDa beta.	Endoplasmic reticulum chaperone BiP.	0.937
ENSSGRP00000016144	LOC107572500	ENSSGRP00000016144	ENSSGRP00000035858	Heat shock protein 90kDa beta.	78 kDa glucose-regulated protein-like.	0.937
ENSSGRP00000016144	LOC107601604	ENSSGRP00000016144	ENSSGRP00000053912	Heat shock protein 90kDa beta.	DnaJ homolog subfamily C member 10-like.	0.954
ENSSGRP00000016144	dnajc10	ENSSGRP00000016144	ENSSGRP00000011839	Heat shock protein 90kDa beta.	DnaJ homolog subfamily C member 10.	0.954
ENSSGRP00000092420	ENSSGRP00000006514	ENSSGRP00000092420	ENSSGRP00000006514	Heat shock protein 90kDa beta.	annotation not available	0.901
ENSSGRP00000092420	ENSSGRP00000016144	ENSSGRP00000092420	ENSSGRP00000016144	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.900
ENSSGRP00000092420	LOC107567952	ENSSGRP00000092420	ENSSGRP00000029975	Heat shock protein 90kDa beta.	Endoplasmic reticulum chaperone BiP.	0.937
ENSSGRP00000092420	LOC107572500	ENSSGRP00000092420	ENSSGRP00000035858	Heat shock protein 90kDa beta.	78 kDa glucose-regulated protein-like.	0.937
ENSSGRP00000092420	LOC107601604	ENSSGRP00000092420	ENSSGRP00000053912	Heat shock protein 90kDa beta.	DnaJ homolog subfamily C member 10-like.	0.954
ENSSGRP00000092420	dnajc10	ENSSGRP00000092420	ENSSGRP00000011839	Heat shock protein 90kDa beta.	DnaJ homolog subfamily C member 10.	0.954
LOC107567952	ENSSGRP00000006514	ENSSGRP00000029975	ENSSGRP00000006514	Endoplasmic reticulum chaperone BiP.	annotation not available	0.816
LOC107567952	ENSSGRP00000016144	ENSSGRP00000029975	ENSSGRP00000016144	Endoplasmic reticulum chaperone BiP.	Heat shock protein 90kDa beta.	0.937