(5 nodes) U4 snRNP network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107559756	Small nuclear ribonucleoprotein Sm D1-like. (120 aa)
	LOC107598637	Small nuclear ribonucleoprotein G. (76 aa)
	ENSSGRP00000076381	Small nuclear ribonucleoprotein F-like isoform X1. (87 aa)
	LOC107580725-2	Small nuclear ribonucleoprotein E. (92 aa)
	LOC107557830	Small nuclear ribonucleoprotein Sm D2-like. (116 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000076381	LOC107557830	ENSSGRP00000076381	ENSSGRP00000087163	Small nuclear ribonucleoprotein F-like isoform X1.	Small nuclear ribonucleoprotein Sm D2-like.	0.999
ENSSGRP00000076381	LOC107559756	ENSSGRP00000076381	ENSSGRP00000017931	Small nuclear ribonucleoprotein F-like isoform X1.	Small nuclear ribonucleoprotein Sm D1-like.	0.999
ENSSGRP00000076381	LOC107580725-2	ENSSGRP00000076381	ENSSGRP00000078257	Small nuclear ribonucleoprotein F-like isoform X1.	Small nuclear ribonucleoprotein E.	0.997
ENSSGRP00000076381	LOC107598637	ENSSGRP00000076381	ENSSGRP00000036253	Small nuclear ribonucleoprotein F-like isoform X1.	Small nuclear ribonucleoprotein G.	0.997
LOC107557830	ENSSGRP00000076381	ENSSGRP00000087163	ENSSGRP00000076381	Small nuclear ribonucleoprotein Sm D2-like.	Small nuclear ribonucleoprotein F-like isoform X1.	0.999
LOC107557830	LOC107559756	ENSSGRP00000087163	ENSSGRP00000017931	Small nuclear ribonucleoprotein Sm D2-like.	Small nuclear ribonucleoprotein Sm D1-like.	0.999
LOC107557830	LOC107580725-2	ENSSGRP00000087163	ENSSGRP00000078257	Small nuclear ribonucleoprotein Sm D2-like.	Small nuclear ribonucleoprotein E.	0.997
LOC107557830	LOC107598637	ENSSGRP00000087163	ENSSGRP00000036253	Small nuclear ribonucleoprotein Sm D2-like.	Small nuclear ribonucleoprotein G.	0.997
LOC107559756	ENSSGRP00000076381	ENSSGRP00000017931	ENSSGRP00000076381	Small nuclear ribonucleoprotein Sm D1-like.	Small nuclear ribonucleoprotein F-like isoform X1.	0.999
LOC107559756	LOC107557830	ENSSGRP00000017931	ENSSGRP00000087163	Small nuclear ribonucleoprotein Sm D1-like.	Small nuclear ribonucleoprotein Sm D2-like.	0.999
LOC107559756	LOC107580725-2	ENSSGRP00000017931	ENSSGRP00000078257	Small nuclear ribonucleoprotein Sm D1-like.	Small nuclear ribonucleoprotein E.	0.996
LOC107559756	LOC107598637	ENSSGRP00000017931	ENSSGRP00000036253	Small nuclear ribonucleoprotein Sm D1-like.	Small nuclear ribonucleoprotein G.	0.997
LOC107580725-2	ENSSGRP00000076381	ENSSGRP00000078257	ENSSGRP00000076381	Small nuclear ribonucleoprotein E.	Small nuclear ribonucleoprotein F-like isoform X1.	0.997
LOC107580725-2	LOC107557830	ENSSGRP00000078257	ENSSGRP00000087163	Small nuclear ribonucleoprotein E.	Small nuclear ribonucleoprotein Sm D2-like.	0.997
LOC107580725-2	LOC107559756	ENSSGRP00000078257	ENSSGRP00000017931	Small nuclear ribonucleoprotein E.	Small nuclear ribonucleoprotein Sm D1-like.	0.996
LOC107580725-2	LOC107598637	ENSSGRP00000078257	ENSSGRP00000036253	Small nuclear ribonucleoprotein E.	Small nuclear ribonucleoprotein G.	0.995
LOC107598637	ENSSGRP00000076381	ENSSGRP00000036253	ENSSGRP00000076381	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein F-like isoform X1.	0.997
LOC107598637	LOC107557830	ENSSGRP00000036253	ENSSGRP00000087163	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D2-like.	0.997
LOC107598637	LOC107559756	ENSSGRP00000036253	ENSSGRP00000017931	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1-like.	0.997
LOC107598637	LOC107580725-2	ENSSGRP00000036253	ENSSGRP00000078257	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E.	0.995