(17 nodes) THO complex, and C5-methylcytidine-containing RNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000989	THO complex 3. (217 aa)
	ENSSGRP00000013892	THO complex subunit 2-like. (1475 aa)
	Thoc1	THO complex subunit 1. (686 aa)
	ENSSGRP00000019367	THO complex subunit 1-like. (400 aa)
	LOC107595593	ATP-dependent RNA helicase UAP56/SUB2. (468 aa)
	LOC107598370	THO complex subunit 3-like. (349 aa)
	LOC107584302	ATP-dependent RNA helicase UAP56/SUB2. (450 aa)
	thoc7	THO complex subunit 7 homolog. (217 aa)
	ENSSGRP00000048674	THO complex 5. (679 aa)
	ENSSGRP00000060924	THO complex subunit 4-like. (178 aa)
	LOC107563747	ATP-dependent RNA helicase DDX39A-like. (456 aa)
	ENSSGRP00000094219	LOW QUALITY PROTEIN: THO complex subunit 5 homolog. (698 aa)
	alyref	THO complex subunit 4. (298 aa)
	LOC107551027	THO complex subunit 7 homolog. (225 aa)
	ENSSGRP00000104840	THO complex subunit 1-like. (86 aa)
	ENSSGRP00000111694	THO complex 6. (328 aa)
	ENSSGRP00000112014	THO complex 2. (1370 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000989	ENSSGRP00000013892	ENSSGRP00000000989	ENSSGRP00000013892	THO complex 3.	THO complex subunit 2-like.	0.990
ENSSGRP00000000989	ENSSGRP00000019367	ENSSGRP00000000989	ENSSGRP00000019367	THO complex 3.	THO complex subunit 1-like.	0.981
ENSSGRP00000000989	ENSSGRP00000048674	ENSSGRP00000000989	ENSSGRP00000048674	THO complex 3.	THO complex 5.	0.990
ENSSGRP00000000989	ENSSGRP00000060924	ENSSGRP00000000989	ENSSGRP00000060924	THO complex 3.	THO complex subunit 4-like.	0.950
ENSSGRP00000000989	ENSSGRP00000094219	ENSSGRP00000000989	ENSSGRP00000094219	THO complex 3.	LOW QUALITY PROTEIN: THO complex subunit 5 homolog.	0.990
ENSSGRP00000000989	ENSSGRP00000104840	ENSSGRP00000000989	ENSSGRP00000104840	THO complex 3.	THO complex subunit 1-like.	0.981
ENSSGRP00000000989	ENSSGRP00000111694	ENSSGRP00000000989	ENSSGRP00000111694	THO complex 3.	THO complex 6.	0.999
ENSSGRP00000000989	ENSSGRP00000112014	ENSSGRP00000000989	ENSSGRP00000112014	THO complex 3.	THO complex 2.	0.990
ENSSGRP00000000989	LOC107551027	ENSSGRP00000000989	ENSSGRP00000099071	THO complex 3.	THO complex subunit 7 homolog.	0.991
ENSSGRP00000000989	LOC107563747	ENSSGRP00000000989	ENSSGRP00000091340	THO complex 3.	ATP-dependent RNA helicase DDX39A-like.	0.875
ENSSGRP00000000989	LOC107584302	ENSSGRP00000000989	ENSSGRP00000042790	THO complex 3.	ATP-dependent RNA helicase UAP56/SUB2.	0.875
ENSSGRP00000000989	LOC107595593	ENSSGRP00000000989	ENSSGRP00000025232	THO complex 3.	ATP-dependent RNA helicase UAP56/SUB2.	0.875
ENSSGRP00000000989	Thoc1	ENSSGRP00000000989	ENSSGRP00000017940	THO complex 3.	THO complex subunit 1.	0.981
ENSSGRP00000000989	alyref	ENSSGRP00000000989	ENSSGRP00000098345	THO complex 3.	THO complex subunit 4.	0.950
ENSSGRP00000000989	thoc7	ENSSGRP00000000989	ENSSGRP00000048223	THO complex 3.	THO complex subunit 7 homolog.	0.991
ENSSGRP00000013892	ENSSGRP00000000989	ENSSGRP00000013892	ENSSGRP00000000989	THO complex subunit 2-like.	THO complex 3.	0.990
ENSSGRP00000013892	ENSSGRP00000019367	ENSSGRP00000013892	ENSSGRP00000019367	THO complex subunit 2-like.	THO complex subunit 1-like.	0.982
ENSSGRP00000013892	ENSSGRP00000048674	ENSSGRP00000013892	ENSSGRP00000048674	THO complex subunit 2-like.	THO complex 5.	0.990
ENSSGRP00000013892	ENSSGRP00000060924	ENSSGRP00000013892	ENSSGRP00000060924	THO complex subunit 2-like.	THO complex subunit 4-like.	0.988
ENSSGRP00000013892	ENSSGRP00000094219	ENSSGRP00000013892	ENSSGRP00000094219	THO complex subunit 2-like.	LOW QUALITY PROTEIN: THO complex subunit 5 homolog.	0.990