(7 nodes) Nuclear cap binding complex, and Arsenite-resistance protein 2 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ncbp2	Nuclear cap-binding protein subunit 2. (162 aa)
	ENSSGRP00000017283	annotation not available (629 aa)
	LOC107569251	Nuclear cap-binding protein subunit 2-like. (104 aa)
	phax	Phosphorylated adapter RNA export protein. (356 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (774 aa)
	ENSSGRP00000081604	Serrate RNA effector molecule homolog (Arabidopsis). (729 aa)
	LOC107591506	Serrate RNA effector molecule homolog. (855 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000017283	ENSSGRP00000081604	ENSSGRP00000017283	ENSSGRP00000081604	annotation not available	Serrate RNA effector molecule homolog (Arabidopsis).	0.990
ENSSGRP00000017283	LOC107569251	ENSSGRP00000017283	ENSSGRP00000055785	annotation not available	Nuclear cap-binding protein subunit 2-like.	0.996
ENSSGRP00000017283	LOC107591506	ENSSGRP00000017283	ENSSGRP00000088779	annotation not available	Serrate RNA effector molecule homolog.	0.990
ENSSGRP00000017283	ncbp2	ENSSGRP00000017283	ENSSGRP00000013290	annotation not available	Nuclear cap-binding protein subunit 2.	0.996
ENSSGRP00000017283	phax	ENSSGRP00000017283	ENSSGRP00000059532	annotation not available	Phosphorylated adapter RNA export protein.	0.970
ENSSGRP00000081604	ENSSGRP00000017283	ENSSGRP00000081604	ENSSGRP00000017283	Serrate RNA effector molecule homolog (Arabidopsis).	annotation not available	0.990
ENSSGRP00000081604	LOC107569251	ENSSGRP00000081604	ENSSGRP00000055785	Serrate RNA effector molecule homolog (Arabidopsis).	Nuclear cap-binding protein subunit 2-like.	0.988
ENSSGRP00000081604	NCBP1	ENSSGRP00000081604	ENSSGRP00000077991	Serrate RNA effector molecule homolog (Arabidopsis).	Nuclear cap-binding protein subunit 1.	0.990
ENSSGRP00000081604	ncbp2	ENSSGRP00000081604	ENSSGRP00000013290	Serrate RNA effector molecule homolog (Arabidopsis).	Nuclear cap-binding protein subunit 2.	0.988
ENSSGRP00000081604	phax	ENSSGRP00000081604	ENSSGRP00000059532	Serrate RNA effector molecule homolog (Arabidopsis).	Phosphorylated adapter RNA export protein.	0.966
LOC107569251	ENSSGRP00000017283	ENSSGRP00000055785	ENSSGRP00000017283	Nuclear cap-binding protein subunit 2-like.	annotation not available	0.996
LOC107569251	ENSSGRP00000081604	ENSSGRP00000055785	ENSSGRP00000081604	Nuclear cap-binding protein subunit 2-like.	Serrate RNA effector molecule homolog (Arabidopsis).	0.988
LOC107569251	LOC107591506	ENSSGRP00000055785	ENSSGRP00000088779	Nuclear cap-binding protein subunit 2-like.	Serrate RNA effector molecule homolog.	0.988
LOC107569251	NCBP1	ENSSGRP00000055785	ENSSGRP00000077991	Nuclear cap-binding protein subunit 2-like.	Nuclear cap-binding protein subunit 1.	0.999
LOC107569251	ncbp2	ENSSGRP00000055785	ENSSGRP00000013290	Nuclear cap-binding protein subunit 2-like.	Nuclear cap-binding protein subunit 2.	0.901
LOC107569251	phax	ENSSGRP00000055785	ENSSGRP00000059532	Nuclear cap-binding protein subunit 2-like.	Phosphorylated adapter RNA export protein.	0.993
LOC107591506	ENSSGRP00000017283	ENSSGRP00000088779	ENSSGRP00000017283	Serrate RNA effector molecule homolog.	annotation not available	0.990
LOC107591506	LOC107569251	ENSSGRP00000088779	ENSSGRP00000055785	Serrate RNA effector molecule homolog.	Nuclear cap-binding protein subunit 2-like.	0.988
LOC107591506	NCBP1	ENSSGRP00000088779	ENSSGRP00000077991	Serrate RNA effector molecule homolog.	Nuclear cap-binding protein subunit 1.	0.990
LOC107591506	ncbp2	ENSSGRP00000088779	ENSSGRP00000013290	Serrate RNA effector molecule homolog.	Nuclear cap-binding protein subunit 2.	0.988