(10 nodes) Mixed, incl. Mitochondrial respiratory chain complex III, and Cytochrome c oxidase subunit Va network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107583062	Cytochrome c oxidase subunit 6A, mitochondrial-like. (102 aa)
	ENSSGRP00000011751	annotation not available (160 aa)
	LOC107562383	Cytochrome c oxidase subunit 5B, mitochondrial-like. (114 aa)
	LOC107596603	Cytochrome b-c1 complex subunit 2, mitochondrial-like. (452 aa)
	ENSSGRP00000040506	Cytochrome c oxidase subunit 6B1. (83 aa)
	LOC107591644	Ubiquinol-cytochrome c reductase subunit 7. (110 aa)
	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like. (169 aa)
	ENSSGRP00000061998	Cytochrome b-c1 complex subunit 6, mitochondrial. (99 aa)
	LOC107576348	Cytochrome c oxidase subunit 5A, mitochondrial-like. (141 aa)
	ENSSGRP00000101823	Ubiquinol-cytochrome c reductase core protein 1. (337 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX4I1	ENSSGRP00000011751	ENSSGRP00000057525	ENSSGRP00000011751	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	annotation not available	0.893
COX4I1	ENSSGRP00000040506	ENSSGRP00000057525	ENSSGRP00000040506	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome c oxidase subunit 6B1.	0.898
COX4I1	ENSSGRP00000061998	ENSSGRP00000057525	ENSSGRP00000061998	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome b-c1 complex subunit 6, mitochondrial.	0.903
COX4I1	ENSSGRP00000101823	ENSSGRP00000057525	ENSSGRP00000101823	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Ubiquinol-cytochrome c reductase core protein 1.	0.933
COX4I1	LOC107562383	ENSSGRP00000057525	ENSSGRP00000017440	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome c oxidase subunit 5B, mitochondrial-like.	0.911
COX4I1	LOC107576348	ENSSGRP00000057525	ENSSGRP00000091118	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome c oxidase subunit 5A, mitochondrial-like.	0.967
COX4I1	LOC107583062	ENSSGRP00000057525	ENSSGRP00000002691	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome c oxidase subunit 6A, mitochondrial-like.	0.951
COX4I1	LOC107591644	ENSSGRP00000057525	ENSSGRP00000046410	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Ubiquinol-cytochrome c reductase subunit 7.	0.969
COX4I1	LOC107596603	ENSSGRP00000057525	ENSSGRP00000023638	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	Cytochrome b-c1 complex subunit 2, mitochondrial-like.	0.924
ENSSGRP00000011751	COX4I1	ENSSGRP00000011751	ENSSGRP00000057525	annotation not available	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	0.893
ENSSGRP00000011751	ENSSGRP00000040506	ENSSGRP00000011751	ENSSGRP00000040506	annotation not available	Cytochrome c oxidase subunit 6B1.	0.882
ENSSGRP00000011751	ENSSGRP00000061998	ENSSGRP00000011751	ENSSGRP00000061998	annotation not available	Cytochrome b-c1 complex subunit 6, mitochondrial.	0.956
ENSSGRP00000011751	ENSSGRP00000101823	ENSSGRP00000011751	ENSSGRP00000101823	annotation not available	Ubiquinol-cytochrome c reductase core protein 1.	0.974
ENSSGRP00000011751	LOC107562383	ENSSGRP00000011751	ENSSGRP00000017440	annotation not available	Cytochrome c oxidase subunit 5B, mitochondrial-like.	0.923
ENSSGRP00000011751	LOC107576348	ENSSGRP00000011751	ENSSGRP00000091118	annotation not available	Cytochrome c oxidase subunit 5A, mitochondrial-like.	0.961
ENSSGRP00000011751	LOC107583062	ENSSGRP00000011751	ENSSGRP00000002691	annotation not available	Cytochrome c oxidase subunit 6A, mitochondrial-like.	0.929
ENSSGRP00000011751	LOC107591644	ENSSGRP00000011751	ENSSGRP00000046410	annotation not available	Ubiquinol-cytochrome c reductase subunit 7.	0.994
ENSSGRP00000011751	LOC107596603	ENSSGRP00000011751	ENSSGRP00000023638	annotation not available	Cytochrome b-c1 complex subunit 2, mitochondrial-like.	0.976
ENSSGRP00000040506	COX4I1	ENSSGRP00000040506	ENSSGRP00000057525	Cytochrome c oxidase subunit 6B1.	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like.	0.898
ENSSGRP00000040506	ENSSGRP00000011751	ENSSGRP00000040506	ENSSGRP00000011751	Cytochrome c oxidase subunit 6B1.	annotation not available	0.882