(5 nodes) SUMO is conjugated to E1 (UBA2:SAE1), and Ubiquitin-2 like Rad60 SUMO-like network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000029291	annotation not available (41 aa)
	LOC107583318	SUMO-conjugating enzyme UBC9-like. (158 aa)
	ENSSGRP00000059513	Small ubiquitin-related modifier 1-like. (58 aa)
	LOC107581835	Ubiquitin-like 1-activating enzyme E1 B. (640 aa)
	LOC107585558	Ubiquitin-like 1-activating enzyme E1 A. (348 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000029291	ENSSGRP00000059513	ENSSGRP00000029291	ENSSGRP00000059513	annotation not available	Small ubiquitin-related modifier 1-like.	0.698
ENSSGRP00000029291	LOC107581835	ENSSGRP00000029291	ENSSGRP00000075334	annotation not available	Ubiquitin-like 1-activating enzyme E1 B.	0.938
ENSSGRP00000029291	LOC107583318	ENSSGRP00000029291	ENSSGRP00000030936	annotation not available	SUMO-conjugating enzyme UBC9-like.	0.845
ENSSGRP00000029291	LOC107585558	ENSSGRP00000029291	ENSSGRP00000077741	annotation not available	Ubiquitin-like 1-activating enzyme E1 A.	0.936
ENSSGRP00000059513	ENSSGRP00000029291	ENSSGRP00000059513	ENSSGRP00000029291	Small ubiquitin-related modifier 1-like.	annotation not available	0.698
ENSSGRP00000059513	LOC107581835	ENSSGRP00000059513	ENSSGRP00000075334	Small ubiquitin-related modifier 1-like.	Ubiquitin-like 1-activating enzyme E1 B.	0.989
ENSSGRP00000059513	LOC107583318	ENSSGRP00000059513	ENSSGRP00000030936	Small ubiquitin-related modifier 1-like.	SUMO-conjugating enzyme UBC9-like.	0.985
ENSSGRP00000059513	LOC107585558	ENSSGRP00000059513	ENSSGRP00000077741	Small ubiquitin-related modifier 1-like.	Ubiquitin-like 1-activating enzyme E1 A.	0.988
LOC107581835	ENSSGRP00000029291	ENSSGRP00000075334	ENSSGRP00000029291	Ubiquitin-like 1-activating enzyme E1 B.	annotation not available	0.938
LOC107581835	ENSSGRP00000059513	ENSSGRP00000075334	ENSSGRP00000059513	Ubiquitin-like 1-activating enzyme E1 B.	Small ubiquitin-related modifier 1-like.	0.989
LOC107581835	LOC107583318	ENSSGRP00000075334	ENSSGRP00000030936	Ubiquitin-like 1-activating enzyme E1 B.	SUMO-conjugating enzyme UBC9-like.	0.954
LOC107581835	LOC107585558	ENSSGRP00000075334	ENSSGRP00000077741	Ubiquitin-like 1-activating enzyme E1 B.	Ubiquitin-like 1-activating enzyme E1 A.	0.997
LOC107583318	ENSSGRP00000029291	ENSSGRP00000030936	ENSSGRP00000029291	SUMO-conjugating enzyme UBC9-like.	annotation not available	0.845
LOC107583318	ENSSGRP00000059513	ENSSGRP00000030936	ENSSGRP00000059513	SUMO-conjugating enzyme UBC9-like.	Small ubiquitin-related modifier 1-like.	0.985
LOC107583318	LOC107581835	ENSSGRP00000030936	ENSSGRP00000075334	SUMO-conjugating enzyme UBC9-like.	Ubiquitin-like 1-activating enzyme E1 B.	0.954
LOC107583318	LOC107585558	ENSSGRP00000030936	ENSSGRP00000077741	SUMO-conjugating enzyme UBC9-like.	Ubiquitin-like 1-activating enzyme E1 A.	0.944
LOC107585558	ENSSGRP00000029291	ENSSGRP00000077741	ENSSGRP00000029291	Ubiquitin-like 1-activating enzyme E1 A.	annotation not available	0.936
LOC107585558	ENSSGRP00000059513	ENSSGRP00000077741	ENSSGRP00000059513	Ubiquitin-like 1-activating enzyme E1 A.	Small ubiquitin-related modifier 1-like.	0.988
LOC107585558	LOC107581835	ENSSGRP00000077741	ENSSGRP00000075334	Ubiquitin-like 1-activating enzyme E1 A.	Ubiquitin-like 1-activating enzyme E1 B.	0.997
LOC107585558	LOC107583318	ENSSGRP00000077741	ENSSGRP00000030936	Ubiquitin-like 1-activating enzyme E1 A.	SUMO-conjugating enzyme UBC9-like.	0.944