(38 nodes) Nucleosome core, and Histone H3-K27 demethylation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000750	annotation not available (98 aa)
	ENSSGRP00000002243	annotation not available (101 aa)
	ENSSGRP00000002316	annotation not available (93 aa)
	ENSSGRP00000002615	annotation not available (101 aa)
	ENSSGRP00000002619	annotation not available (93 aa)
	ENSSGRP00000004951	annotation not available (94 aa)
	ENSSGRP00000005083	Histone H2B. (151 aa)
	LOC107569589	Histone H2B. (124 aa)
	ENSSGRP00000007138	annotation not available (93 aa)
	ENSSGRP00000007788	annotation not available (126 aa)
	LOC107569592	Histone H2A-like. (128 aa)
	LOC107575134-2	Histone H2A-like. (128 aa)
	LOC107554308	Lysine-specific demethylase 6B-like isoform X1. (1682 aa)
	ENSSGRP00000012765	Core histone macro-H2A.2-like. (265 aa)
	LOC107575987	Histone H2B-like. (124 aa)
	H3-2	H3.2 histone (putative). (101 aa)
	ENSSGRP00000019618	annotation not available (93 aa)
	ENSSGRP00000019736	annotation not available (137 aa)
	ENSSGRP00000022136	annotation not available (109 aa)
	ENSSGRP00000022137	Histone H2A-like. (127 aa)
	ENSSGRP00000026558	Histone H2B 3. (123 aa)
	ENSSGRP00000026761	Histone H2B-like. (224 aa)
	ENSSGRP00000027242	Histone H2AX. (132 aa)
	ENSSGRP00000028754	annotation not available (96 aa)
	LOC107548474-2	Histone H3.3. (136 aa)
	LOC107589552	Core histone macro-H2A.2. (368 aa)
	LOC107564153	Histone H2A-like. (128 aa)
	ENSSGRP00000053783	Lysine (K)-specific demethylase 6A, like. (1209 aa)
	LOC107563210	Histone H3-like centromeric protein A. (147 aa)
	ENSSGRP00000065954	annotation not available (94 aa)
	LOC107597795	Histone H2A deubiquitinase MYSM1-like. (821 aa)
	LOC107550237	Histone H3.3-like. (145 aa)
	ENSSGRP00000082318	Core histone macro-H2A.1. (159 aa)
	kdm6b	Lysine-specific demethylase 6B. (2020 aa)
	ENSSGRP00000092813	Lysine (K)-specific demethylase 6A. (1343 aa)
	LOC107586158	Lysine-specific demethylase 6B-like isoform X1. (1714 aa)
	ENSSGRP00000110057	Myb-like, SWIRM and MPN domains 1. (761 aa)
	ENSSGRP00000111311	Lysine-specific demethylase 6B-like. (1273 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000750	ENSSGRP00000002243	ENSSGRP00000000750	ENSSGRP00000002243	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000002615	ENSSGRP00000000750	ENSSGRP00000002615	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000005083	ENSSGRP00000000750	ENSSGRP00000005083	annotation not available	Histone H2B.	0.745
ENSSGRP00000000750	ENSSGRP00000007788	ENSSGRP00000000750	ENSSGRP00000007788	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000012765	ENSSGRP00000000750	ENSSGRP00000012765	annotation not available	Core histone macro-H2A.2-like.	0.825
ENSSGRP00000000750	ENSSGRP00000019736	ENSSGRP00000000750	ENSSGRP00000019736	annotation not available	annotation not available	0.656
ENSSGRP00000000750	ENSSGRP00000022136	ENSSGRP00000000750	ENSSGRP00000022136	annotation not available	annotation not available	0.745
ENSSGRP00000000750	ENSSGRP00000022137	ENSSGRP00000000750	ENSSGRP00000022137	annotation not available	Histone H2A-like.	0.687
ENSSGRP00000000750	ENSSGRP00000026558	ENSSGRP00000000750	ENSSGRP00000026558	annotation not available	Histone H2B 3.	0.745
ENSSGRP00000000750	ENSSGRP00000026761	ENSSGRP00000000750	ENSSGRP00000026761	annotation not available	Histone H2B-like.	0.745
ENSSGRP00000000750	ENSSGRP00000027242	ENSSGRP00000000750	ENSSGRP00000027242	annotation not available	Histone H2AX.	0.687
ENSSGRP00000000750	ENSSGRP00000053783	ENSSGRP00000000750	ENSSGRP00000053783	annotation not available	Lysine (K)-specific demethylase 6A, like.	0.803
ENSSGRP00000000750	ENSSGRP00000082318	ENSSGRP00000000750	ENSSGRP00000082318	annotation not available	Core histone macro-H2A.1.	0.825
ENSSGRP00000000750	ENSSGRP00000092813	ENSSGRP00000000750	ENSSGRP00000092813	annotation not available	Lysine (K)-specific demethylase 6A.	0.803
ENSSGRP00000000750	ENSSGRP00000110057	ENSSGRP00000000750	ENSSGRP00000110057	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.844
ENSSGRP00000000750	ENSSGRP00000111311	ENSSGRP00000000750	ENSSGRP00000111311	annotation not available	Lysine-specific demethylase 6B-like.	0.803
ENSSGRP00000000750	H3-2	ENSSGRP00000000750	ENSSGRP00000019065	annotation not available	H3.2 histone (putative).	0.670
ENSSGRP00000000750	LOC107548474-2	ENSSGRP00000000750	ENSSGRP00000037012	annotation not available	Histone H3.3.	0.670
ENSSGRP00000000750	LOC107550237	ENSSGRP00000000750	ENSSGRP00000079250	annotation not available	Histone H3.3-like.	0.670
ENSSGRP00000000750	LOC107554308	ENSSGRP00000000750	ENSSGRP00000009754	annotation not available	Lysine-specific demethylase 6B-like isoform X1.	0.803