(19 nodes) Mixed, incl. VCP-NPL4-UFD1 AAA ATPase complex, and PUL domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004573	FAS-associated factor 1-like. (624 aa)
	LOC107561846	Nuclear protein localization protein 4 homolog. (625 aa)
	LOC107552754	Fanconi anemia core complex-associated protein 100-like. (835 aa)
	faf1	FAS-associated factor 1. (673 aa)
	LOC107601397	Nuclear protein localization protein 4 homolog. (589 aa)
	LOC107553259	UBX domain-containing protein 7-like. (514 aa)
	LOC107552148	Ubiquitin fusion degradation protein 1 homolog. (303 aa)
	LOC107580473	Ubiquitin thioesterase OTU1. (301 aa)
	LOC107570768	Ubiquitin conjugation factor E4 B-like isoform X1. (1345 aa)
	ENSSGRP00000035289	annotation not available (197 aa)
	LOC107601482	UBX domain-containing protein 1-like. (302 aa)
	LOC107553030	Ubiquitin fusion degradation protein 1 homolog. (308 aa)
	LOC107549730	Phospholipase A-2-activating protein-like. (799 aa)
	ENSSGRP00000074659	Phospholipase A2-activating protein. (801 aa)
	LOC107582461	Ubiquitin thioesterase OTU1-like. (301 aa)
	LOC107563300	UBX domain-containing protein 7-like isoform X1. (512 aa)
	spata5l1	Spermatogenesis-associated protein 5-like protein 1 isoform X1. (748 aa)
	ENSSGRP00000103417	annotation not available (730 aa)
	ENSSGRP00000108061	Valosin containing protein. (760 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004573	ENSSGRP00000035289	ENSSGRP00000004573	ENSSGRP00000035289	FAS-associated factor 1-like.	annotation not available	0.643
ENSSGRP00000004573	ENSSGRP00000074659	ENSSGRP00000004573	ENSSGRP00000074659	FAS-associated factor 1-like.	Phospholipase A2-activating protein.	0.867
ENSSGRP00000004573	ENSSGRP00000103417	ENSSGRP00000004573	ENSSGRP00000103417	FAS-associated factor 1-like.	annotation not available	0.886
ENSSGRP00000004573	ENSSGRP00000108061	ENSSGRP00000004573	ENSSGRP00000108061	FAS-associated factor 1-like.	Valosin containing protein.	0.949
ENSSGRP00000004573	LOC107549730	ENSSGRP00000004573	ENSSGRP00000067451	FAS-associated factor 1-like.	Phospholipase A-2-activating protein-like.	0.867
ENSSGRP00000004573	LOC107552148	ENSSGRP00000004573	ENSSGRP00000024546	FAS-associated factor 1-like.	Ubiquitin fusion degradation protein 1 homolog.	0.965
ENSSGRP00000004573	LOC107552754	ENSSGRP00000004573	ENSSGRP00000012841	FAS-associated factor 1-like.	Fanconi anemia core complex-associated protein 100-like.	0.847
ENSSGRP00000004573	LOC107553030	ENSSGRP00000004573	ENSSGRP00000056947	FAS-associated factor 1-like.	Ubiquitin fusion degradation protein 1 homolog.	0.965
ENSSGRP00000004573	LOC107553259	ENSSGRP00000004573	ENSSGRP00000022752	FAS-associated factor 1-like.	UBX domain-containing protein 7-like.	0.987
ENSSGRP00000004573	LOC107561846	ENSSGRP00000004573	ENSSGRP00000005839	FAS-associated factor 1-like.	Nuclear protein localization protein 4 homolog.	0.847
ENSSGRP00000004573	LOC107563300	ENSSGRP00000004573	ENSSGRP00000081021	FAS-associated factor 1-like.	UBX domain-containing protein 7-like isoform X1.	0.987
ENSSGRP00000004573	LOC107570768	ENSSGRP00000004573	ENSSGRP00000031302	FAS-associated factor 1-like.	Ubiquitin conjugation factor E4 B-like isoform X1.	0.681
ENSSGRP00000004573	LOC107601397	ENSSGRP00000004573	ENSSGRP00000014956	FAS-associated factor 1-like.	Nuclear protein localization protein 4 homolog.	0.847
ENSSGRP00000004573	LOC107601482	ENSSGRP00000004573	ENSSGRP00000044638	FAS-associated factor 1-like.	UBX domain-containing protein 1-like.	0.962
ENSSGRP00000004573	faf1	ENSSGRP00000004573	ENSSGRP00000012962	FAS-associated factor 1-like.	FAS-associated factor 1.	0.900
ENSSGRP00000004573	spata5l1	ENSSGRP00000004573	ENSSGRP00000098119	FAS-associated factor 1-like.	Spermatogenesis-associated protein 5-like protein 1 isoform X1.	0.886
ENSSGRP00000035289	ENSSGRP00000004573	ENSSGRP00000035289	ENSSGRP00000004573	annotation not available	FAS-associated factor 1-like.	0.643
ENSSGRP00000035289	ENSSGRP00000074659	ENSSGRP00000035289	ENSSGRP00000074659	annotation not available	Phospholipase A2-activating protein.	0.872
ENSSGRP00000035289	ENSSGRP00000103417	ENSSGRP00000035289	ENSSGRP00000103417	annotation not available	annotation not available	0.842
ENSSGRP00000035289	ENSSGRP00000108061	ENSSGRP00000035289	ENSSGRP00000108061	annotation not available	Valosin containing protein.	0.842