(36 nodes) Aggresome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000016326	DNA polymerase delta catalytic subunit-like. (831 aa)
	LOC107575345	Sequestosome-1-like isoform X1. (476 aa)
	ENSSGRP00000010721	annotation not available (125 aa)
	HSPB7	Heat shock protein beta-7-like. (160 aa)
	ENSSGRP00000004976	Sequestosome-1-like. (319 aa)
	ENSSGRP00000004972	Sequestosome-1-like. (90 aa)
	LOC107559134	5'-3' exoribonuclease 2-like isoform X1. (958 aa)
	LOC107591086	Heat shock protein beta-7-like. (160 aa)
	LOC107552651	ER degradation-enhancing alpha-mannosidase-like protein 1. (631 aa)
	ENSSGRP00000110934	Parkin RBR E3 ubiquitin protein ligase. (455 aa)
	ENSSGRP00000094757	Kelch-like family member 14. (587 aa)
	ENSSGRP00000094492	Ring finger protein 32. (369 aa)
	urb2	Unhealthy ribosome biogenesis protein 2 homolog. (1465 aa)
	ENSSGRP00000105623	Ran GTPase-activating protein 1-like. (520 aa)
	rangap1	Ran GTPase activating protein 1. (577 aa)
	ENSSGRP00000086244	annotation not available (90 aa)
	ENSSGRP00000081416	LOW QUALITY PROTEIN: gamma-secretase-activating protein-like. (148 aa)
	ENSSGRP00000081405	annotation not available (172 aa)
	LOC107584463	ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1. (635 aa)
	LOC107554056	Ran GTPase-activating protein 1-like isoform X1. (569 aa)
	pold1	DNA polymerase delta catalytic subunit. (1106 aa)
	ENSSGRP00000065294	annotation not available (126 aa)
	ENSSGRP00000063782	Ring finger protein 32. (290 aa)
	prkn	E3 ubiquitin-protein ligase parkin. (438 aa)
	ENSSGRP00000059604	PR domain zinc finger protein 16-like. (1116 aa)
	ENSSGRP00000058842	Tripartite motif-containing protein 66-like isoform X1. (429 aa)
	ENSSGRP00000055373	Tripartite motif containing 37. (818 aa)
	LOC107548427	5'-3' exoribonuclease 2-like isoform X1. (954 aa)
	ENSSGRP00000038399	Tripartite motif containing 66. (871 aa)
	ENSSGRP00000032177	Caspase recruitment domain family, member 14. (616 aa)
	ENSSGRP00000033808	annotation not available (148 aa)
	ENSSGRP00000029905	Ran GTPase-activating protein 1-like. (509 aa)
	ENSSGRP00000028573	Tripartite motif containing 37. (772 aa)
	ENSSGRP00000021002	annotation not available (116 aa)
	Prdm16	PR domain zinc finger protein 16 isoform X1. (1276 aa)
	ENSSGRP00000017974	annotation not available (756 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004972	ENSSGRP00000004976	ENSSGRP00000004972	ENSSGRP00000004976	Sequestosome-1-like.	Sequestosome-1-like.	0.935
ENSSGRP00000004972	ENSSGRP00000110934	ENSSGRP00000004972	ENSSGRP00000110934	Sequestosome-1-like.	Parkin RBR E3 ubiquitin protein ligase.	0.856
ENSSGRP00000004972	LOC107575345	ENSSGRP00000004972	ENSSGRP00000015322	Sequestosome-1-like.	Sequestosome-1-like isoform X1.	0.901
ENSSGRP00000004972	prkn	ENSSGRP00000004972	ENSSGRP00000063738	Sequestosome-1-like.	E3 ubiquitin-protein ligase parkin.	0.856
ENSSGRP00000004976	ENSSGRP00000004972	ENSSGRP00000004976	ENSSGRP00000004972	Sequestosome-1-like.	Sequestosome-1-like.	0.935
ENSSGRP00000004976	ENSSGRP00000110934	ENSSGRP00000004976	ENSSGRP00000110934	Sequestosome-1-like.	Parkin RBR E3 ubiquitin protein ligase.	0.856
ENSSGRP00000004976	LOC107575345	ENSSGRP00000004976	ENSSGRP00000015322	Sequestosome-1-like.	Sequestosome-1-like isoform X1.	0.902
ENSSGRP00000004976	prkn	ENSSGRP00000004976	ENSSGRP00000063738	Sequestosome-1-like.	E3 ubiquitin-protein ligase parkin.	0.856
ENSSGRP00000016326	pold1	ENSSGRP00000016326	ENSSGRP00000070896	DNA polymerase delta catalytic subunit-like.	DNA polymerase delta catalytic subunit.	0.901
ENSSGRP00000081405	ENSSGRP00000110934	ENSSGRP00000081405	ENSSGRP00000110934	annotation not available	Parkin RBR E3 ubiquitin protein ligase.	0.854
ENSSGRP00000081405	prkn	ENSSGRP00000081405	ENSSGRP00000063738	annotation not available	E3 ubiquitin-protein ligase parkin.	0.854
ENSSGRP00000081416	ENSSGRP00000110934	ENSSGRP00000081416	ENSSGRP00000110934	LOW QUALITY PROTEIN: gamma-secretase-activating protein-like.	Parkin RBR E3 ubiquitin protein ligase.	0.854
ENSSGRP00000081416	prkn	ENSSGRP00000081416	ENSSGRP00000063738	LOW QUALITY PROTEIN: gamma-secretase-activating protein-like.	E3 ubiquitin-protein ligase parkin.	0.854
ENSSGRP00000086244	ENSSGRP00000110934	ENSSGRP00000086244	ENSSGRP00000110934	annotation not available	Parkin RBR E3 ubiquitin protein ligase.	0.856
ENSSGRP00000086244	prkn	ENSSGRP00000086244	ENSSGRP00000063738	annotation not available	E3 ubiquitin-protein ligase parkin.	0.856
ENSSGRP00000105623	LOC107554056	ENSSGRP00000105623	ENSSGRP00000072649	Ran GTPase-activating protein 1-like.	Ran GTPase-activating protein 1-like isoform X1.	0.901
ENSSGRP00000110934	ENSSGRP00000004972	ENSSGRP00000110934	ENSSGRP00000004972	Parkin RBR E3 ubiquitin protein ligase.	Sequestosome-1-like.	0.856
ENSSGRP00000110934	ENSSGRP00000004976	ENSSGRP00000110934	ENSSGRP00000004976	Parkin RBR E3 ubiquitin protein ligase.	Sequestosome-1-like.	0.856
ENSSGRP00000110934	ENSSGRP00000081405	ENSSGRP00000110934	ENSSGRP00000081405	Parkin RBR E3 ubiquitin protein ligase.	annotation not available	0.854
ENSSGRP00000110934	ENSSGRP00000081416	ENSSGRP00000110934	ENSSGRP00000081416	Parkin RBR E3 ubiquitin protein ligase.	LOW QUALITY PROTEIN: gamma-secretase-activating protein-like.	0.854