(122 nodes) Small nuclear ribonucleoprotein complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pold2	Splicing factor 3A subunit 1-like. (787 aa)
	LOC107550894	Pre-mRNA-processing factor 39-like isoform X1. (700 aa)
	PRPF6	Pre-mRNA-processing factor 6 isoform X1. (1014 aa)
	LOC107582988	CD2 antigen cytoplasmic tail-binding protein 2-like. (376 aa)
	LOC107557460	Small nuclear ribonucleoprotein Sm D1. (112 aa)
	LOC107587203	RNA-binding motif protein, X-linked 2-like isoform X1. (338 aa)
	LOC107554052	PHD finger-like domain-containing protein 5A isoform X1. (110 aa)
	LOC107584099	PHD finger-like domain-containing protein 5A. (110 aa)
	LOC107595847	Splicing factor 3B subunit 1-like isoform X1. (1311 aa)
	LOC107569635	Splicing factor 3B subunit 1 isoform X1. (1309 aa)
	LOC107552928-2	Splicing factor 3B subunit 5. (86 aa)
	Lsm5	U6 snRNA-associated Sm-like protein LSm5. (62 aa)
	LOC107592025	U5 snRNP protein, DIM1 family. (143 aa)
	LOC107548851	HIV Tat-specific factor 1 homolog. (454 aa)
	LOC107548810	Small nuclear ribonucleoprotein F. (86 aa)
	ENSSGRP00000099144	Uncharacterized protein LOC107562890 isoform X1. (207 aa)
	LOC107595454	U1 small nuclear ribonucleoprotein C-like. (155 aa)
	LOC107602857	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2134 aa)
	ENSSGRP00000097411	U2 small nuclear ribonucleoprotein B''-like. (180 aa)
	LOC107600046-2	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	ENSSGRP00000095493	U1 small nuclear ribonucleoprotein A-like. (90 aa)
	ENSSGRP00000095490	annotation not available (248 aa)
	LOC107593623	Thioredoxin-like protein 4A. (144 aa)
	LOC107564451	Splicing factor 3A subunit 1-like. (784 aa)
	LOC107561126	Putative RNA-binding protein Luc7-like 1. (391 aa)
	ENSSGRP00000093322	RNA-binding motif protein, X-linked 2-like. (59 aa)
	ENSSGRP00000092865	PRP40 pre-mRNA processing factor 40 homolog A. (632 aa)
	LOC107593559	U5 small nuclear ribonucleoprotein 40 kDa protein. (347 aa)
	LOC107580766	U6 snRNA-associated Sm-like protein LSm8 isoform X1. (96 aa)
	ENSSGRP00000088471	annotation not available (93 aa)
	ENSSGRP00000087764	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (795 aa)
	LOC107557830	Small nuclear ribonucleoprotein Sm D2-like. (116 aa)
	LOC107553538	U6 snRNA-associated Sm-like protein LSm4 isoform X1. (142 aa)
	ENSSGRP00000086077	annotation not available (171 aa)
	ENSSGRP00000086075	Probable ATP-dependent RNA helicase DDX23. (522 aa)
	LOC107587780	U4/U6 small nuclear ribonucleoprotein Prp31-like. (520 aa)
	LOC107600046	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	ENSSGRP00000082485	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2114 aa)
	LOC107554127	CD2 antigen cytoplasmic tail-binding protein 2-like. (386 aa)
	LOC107594252	Putative RNA-binding protein Luc7-like 1. (415 aa)
	ENSSGRP00000080948	pre-mRNA processing factor 8. (2322 aa)
	Txnl4b	Thioredoxin-like protein 4B. (157 aa)
	LOC107580725-2	Small nuclear ribonucleoprotein E. (92 aa)
	LOC107549270	UPF0692 protein C19orf54 homolog isoform X1. (309 aa)
	ENSSGRP00000077722	LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like. (102 aa)
	ENSSGRP00000077204	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (123 aa)
	ENSSGRP00000076381	Small nuclear ribonucleoprotein F-like isoform X1. (87 aa)
	ddx23	Probable ATP-dependent RNA helicase DDX23. (807 aa)
	ENSSGRP00000075801	annotation not available (52 aa)
	LOC107555169	HIV Tat-specific factor 1-like. (486 aa)
	LOC107562728	U6 snRNA-associated Sm-like protein LSm3. (102 aa)
	ENSSGRP00000072435	PHD finger-like domain-containing protein 5A. (142 aa)
	ENSSGRP00000070187	annotation not available (63 aa)
	ENSSGRP00000067252	Elongation factor Tu GTP binding domain containing 2. (801 aa)
	Usp39	U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (507 aa)
	LOC107548576	Pre-mRNA-processing-splicing factor 8-like isoform X1. (2342 aa)
	LOC107552484-2	U6 snRNA-associated Sm-like protein LSm6. (80 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2 isoform X1. (118 aa)
	ENSSGRP00000059245	Splicing factor 3b, subunit 3. (407 aa)
	ENSSGRP00000059243	annotation not available (106 aa)
	ENSSGRP00000059242	annotation not available (71 aa)
	ENSSGRP00000058455	Ubiquitin specific peptidase 39. (451 aa)
	ENSSGRP00000057768	Luc7-like protein 3. (341 aa)
	LOC107573053	U4/U6 small nuclear ribonucleoprotein SNU13. (145 aa)
	LOC107592220	U6 snRNA-associated Sm-like protein LSm8. (96 aa)
	Sf3b3	Splicing factor 3B subunit 3. (1164 aa)
	LOC107586931	U6 snRNA-associated Sm-like protein LSm7. (103 aa)
	snrpb	Small nuclear ribonucleoprotein-associated proteins B and B. (247 aa)
	LOC107569189-2	NHP2-like protein 1. (132 aa)
	ENSSGRP00000048983	Small nuclear ribonucleoprotein-associated protein B'-like. (219 aa)
	sf3b6	Pre-mRNA branch site protein p14. (125 aa)
	LOC107598467	Putative RNA-binding protein Luc7-like 2. (306 aa)
	LOC107587645	U1 small nuclear ribonucleoprotein C isoform X1. (159 aa)
	ENSSGRP00000045098	Splicing factor 3a, subunit 3. (390 aa)
	ENSSGRP00000044634	Si:ch211-114c17.1. (550 aa)
	LOC107552928	Splicing factor 3B subunit 5. (86 aa)
	ENSSGRP00000041694	LSM11, U7 small nuclear RNA associated. (276 aa)
	LOC107594056	Small nuclear ribonucleoprotein G-like isoform X1. (76 aa)
	luc7l	Putative RNA-binding protein Luc7-like 1 isoform X1. (367 aa)
	SF3A3	Splicing factor 3A subunit 3-like. (477 aa)
	LOC107602577	U7 snRNA-associated Sm-like protein LSm11. (320 aa)
	ENSSGRP00000037301	Pre-mRNA-processing factor 39-like. (191 aa)
	LOC107552258-2	U6 snRNA-associated Sm-like protein LSm2. (98 aa)
	ENSSGRP00000036461	annotation not available (145 aa)
	eftud2	116 kDa U5 small nuclear ribonucleoprotein component. (980 aa)
	LOC107598637	Small nuclear ribonucleoprotein G. (76 aa)
	larp7	La-related protein 7. (568 aa)
	ENSSGRP00000031588	Calphotin-like. (319 aa)
	ENSSGRP00000029934	U4/U6 small nuclear ribonucleoprotein Prp3-like. (643 aa)
	prpf4	U4/U6 small nuclear ribonucleoprotein PRP4. (525 aa)
	ENSSGRP00000028379	U4/U6 small nuclear ribonucleoprotein Prp3-like. (638 aa)
	Snrpa1	U2 small nuclear ribonucleoprotein A. (98 aa)
	snrpb2	U2 small nuclear ribonucleoprotein B'. (219 aa)
	LOC107591625	U5 small nuclear ribonucleoprotein 40 kDa protein-like. (346 aa)
	ENSSGRP00000025646	Splicing factor 3b, subunit 2. (739 aa)
	LOC107580725	Small nuclear ribonucleoprotein E isoform X1. (92 aa)
	LOC107557072	U4/U6.U5 tri-snRNP component SNU23. (198 aa)
	LOC107552837	U4/U6 small nuclear ribonucleoprotein PRP31. (509 aa)
	LOC107569189	U4/U6 small nuclear ribonucleoprotein SNU13. (128 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1. (773 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3. (102 aa)
	LOC107575440	Splicing factor 3A subunit 1-like. (536 aa)
	SF3B2	Splicing factor 3b subunit 2. (653 aa)
	ENSSGRP00000018739	U6 snRNA-associated Sm-like protein LSm4. (102 aa)
	LOC107600898	Small nuclear ribonucleoprotein Sm D3-like. (128 aa)
	LOC107559756	Small nuclear ribonucleoprotein Sm D1-like. (120 aa)
	ENSSGRP00000014483	annotation not available (56 aa)
	LOC107552484	U6 snRNA-associated Sm-like protein LSm6. (80 aa)
	prpf39	Pre-mRNA-processing factor 39 isoform X1. (747 aa)
	LOC107578520	Luc7-like protein 3. (228 aa)
	ENSSGRP00000010424	Splicing factor 3B subunit 3-like. (332 aa)
	lsm10	U7 snRNA-associated Sm-like protein LSm10. (120 aa)
	prpf40a	Pre-mRNA-processing factor 40 homolog A isoform X1. (851 aa)
	ENSSGRP00000006652	annotation not available (68 aa)
	ENSSGRP00000006177	annotation not available (86 aa)
	ENSSGRP00000005385	annotation not available (112 aa)
	ENSSGRP00000005325	annotation not available (375 aa)
	PRPF18	pre-mRNA processing factor 18. (240 aa)
	ENSSGRP00000003457	Small nuclear ribonucleoprotein Sm D3. (147 aa)
	LOC107590032	Zinc finger matrin-type protein 2-like. (235 aa)
	ENSSGRP00000001226	U6 snRNA-associated Sm-like protein LSm3. (104 aa)
	ENSSGRP00000000245	Splicing factor 3a, subunit 2. (283 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000245	ENSSGRP00000001226	ENSSGRP00000000245	ENSSGRP00000001226	Splicing factor 3a, subunit 2.	U6 snRNA-associated Sm-like protein LSm3.	0.878
ENSSGRP00000000245	ENSSGRP00000003457	ENSSGRP00000000245	ENSSGRP00000003457	Splicing factor 3a, subunit 2.	Small nuclear ribonucleoprotein Sm D3.	0.975
ENSSGRP00000000245	ENSSGRP00000005325	ENSSGRP00000000245	ENSSGRP00000005325	Splicing factor 3a, subunit 2.	annotation not available	0.993
ENSSGRP00000000245	ENSSGRP00000005385	ENSSGRP00000000245	ENSSGRP00000005385	Splicing factor 3a, subunit 2.	annotation not available	0.997
ENSSGRP00000000245	ENSSGRP00000006177	ENSSGRP00000000245	ENSSGRP00000006177	Splicing factor 3a, subunit 2.	annotation not available	0.867
ENSSGRP00000000245	ENSSGRP00000006652	ENSSGRP00000000245	ENSSGRP00000006652	Splicing factor 3a, subunit 2.	annotation not available	0.994
ENSSGRP00000000245	ENSSGRP00000010424	ENSSGRP00000000245	ENSSGRP00000010424	Splicing factor 3a, subunit 2.	Splicing factor 3B subunit 3-like.	0.980
ENSSGRP00000000245	ENSSGRP00000014483	ENSSGRP00000000245	ENSSGRP00000014483	Splicing factor 3a, subunit 2.	annotation not available	0.572
ENSSGRP00000000245	ENSSGRP00000018739	ENSSGRP00000000245	ENSSGRP00000018739	Splicing factor 3a, subunit 2.	U6 snRNA-associated Sm-like protein LSm4.	0.990
ENSSGRP00000000245	ENSSGRP00000025646	ENSSGRP00000000245	ENSSGRP00000025646	Splicing factor 3a, subunit 2.	Splicing factor 3b, subunit 2.	0.997
ENSSGRP00000000245	ENSSGRP00000028379	ENSSGRP00000000245	ENSSGRP00000028379	Splicing factor 3a, subunit 2.	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.992
ENSSGRP00000000245	ENSSGRP00000029934	ENSSGRP00000000245	ENSSGRP00000029934	Splicing factor 3a, subunit 2.	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.992
ENSSGRP00000000245	ENSSGRP00000036461	ENSSGRP00000000245	ENSSGRP00000036461	Splicing factor 3a, subunit 2.	annotation not available	0.983
ENSSGRP00000000245	ENSSGRP00000037301	ENSSGRP00000000245	ENSSGRP00000037301	Splicing factor 3a, subunit 2.	Pre-mRNA-processing factor 39-like.	0.724
ENSSGRP00000000245	ENSSGRP00000044634	ENSSGRP00000000245	ENSSGRP00000044634	Splicing factor 3a, subunit 2.	Si:ch211-114c17.1.	0.724
ENSSGRP00000000245	ENSSGRP00000045098	ENSSGRP00000000245	ENSSGRP00000045098	Splicing factor 3a, subunit 2.	Splicing factor 3a, subunit 3.	0.999
ENSSGRP00000000245	ENSSGRP00000048983	ENSSGRP00000000245	ENSSGRP00000048983	Splicing factor 3a, subunit 2.	Small nuclear ribonucleoprotein-associated protein B'-like.	0.987
ENSSGRP00000000245	ENSSGRP00000057768	ENSSGRP00000000245	ENSSGRP00000057768	Splicing factor 3a, subunit 2.	Luc7-like protein 3.	0.572
ENSSGRP00000000245	ENSSGRP00000058455	ENSSGRP00000000245	ENSSGRP00000058455	Splicing factor 3a, subunit 2.	Ubiquitin specific peptidase 39.	0.931
ENSSGRP00000000245	ENSSGRP00000059242	ENSSGRP00000000245	ENSSGRP00000059242	Splicing factor 3a, subunit 2.	annotation not available	0.980