(7 nodes) U4atac snRNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552837	U4/U6 small nuclear ribonucleoprotein PRP31. (509 aa)
	LOC107587192	Gem-associated protein 5-like isoform X1. (1462 aa)
	LOC107587780	U4/U6 small nuclear ribonucleoprotein Prp31-like. (520 aa)
	Gemin5	LOW QUALITY PROTEIN: gem-associated protein 5. (1453 aa)
	LOC107573053	U4/U6 small nuclear ribonucleoprotein SNU13. (145 aa)
	LOC107569189-2	NHP2-like protein 1. (132 aa)
	LOC107569189	U4/U6 small nuclear ribonucleoprotein SNU13. (128 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gemin5	LOC107587192	ENSSGRP00000079869	ENSSGRP00000106848	LOW QUALITY PROTEIN: gem-associated protein 5.	Gem-associated protein 5-like isoform X1.	0.900
LOC107552837	LOC107569189	ENSSGRP00000023898	ENSSGRP00000023285	U4/U6 small nuclear ribonucleoprotein PRP31.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.981
LOC107552837	LOC107569189-2	ENSSGRP00000023898	ENSSGRP00000049392	U4/U6 small nuclear ribonucleoprotein PRP31.	NHP2-like protein 1.	0.981
LOC107552837	LOC107573053	ENSSGRP00000023898	ENSSGRP00000057230	U4/U6 small nuclear ribonucleoprotein PRP31.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.981
LOC107569189	LOC107552837	ENSSGRP00000023285	ENSSGRP00000023898	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein PRP31.	0.981
LOC107569189	LOC107573053	ENSSGRP00000023285	ENSSGRP00000057230	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.900
LOC107569189	LOC107587780	ENSSGRP00000023285	ENSSGRP00000084842	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein Prp31-like.	0.981
LOC107569189-2	LOC107552837	ENSSGRP00000049392	ENSSGRP00000023898	NHP2-like protein 1.	U4/U6 small nuclear ribonucleoprotein PRP31.	0.981
LOC107569189-2	LOC107587780	ENSSGRP00000049392	ENSSGRP00000084842	NHP2-like protein 1.	U4/U6 small nuclear ribonucleoprotein Prp31-like.	0.981
LOC107573053	LOC107552837	ENSSGRP00000057230	ENSSGRP00000023898	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein PRP31.	0.981
LOC107573053	LOC107569189	ENSSGRP00000057230	ENSSGRP00000023285	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.900
LOC107573053	LOC107587780	ENSSGRP00000057230	ENSSGRP00000084842	U4/U6 small nuclear ribonucleoprotein SNU13.	U4/U6 small nuclear ribonucleoprotein Prp31-like.	0.981
LOC107587192	Gemin5	ENSSGRP00000106848	ENSSGRP00000079869	Gem-associated protein 5-like isoform X1.	LOW QUALITY PROTEIN: gem-associated protein 5.	0.900
LOC107587780	LOC107569189	ENSSGRP00000084842	ENSSGRP00000023285	U4/U6 small nuclear ribonucleoprotein Prp31-like.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.981
LOC107587780	LOC107569189-2	ENSSGRP00000084842	ENSSGRP00000049392	U4/U6 small nuclear ribonucleoprotein Prp31-like.	NHP2-like protein 1.	0.981
LOC107587780	LOC107573053	ENSSGRP00000084842	ENSSGRP00000057230	U4/U6 small nuclear ribonucleoprotein Prp31-like.	U4/U6 small nuclear ribonucleoprotein SNU13.	0.981