(64 nodes) Phagocytic vesicle membrane network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552379	Ras-related protein Rab-9A-like. (201 aa)
	rab32	RAB32, member RAS oncogene family. (218 aa)
	LOC107562649	Ras-related protein Rab-7a-like. (204 aa)
	LOC107589707	Rab-interacting lysosomal protein. (439 aa)
	ENSSGRP00000063544	Toll-like receptor 1. (575 aa)
	LOC107557781	Ras-related protein Rab-7A. (207 aa)
	LOC107564302	Ras-related protein Rab-9A-like. (201 aa)
	LOC107596793	Ras-related protein Rab-22A isoform X1. (198 aa)
	LOC107601480	Ras-related protein Rab-32-like. (213 aa)
	ENSSGRP00000078238	Synaptotagmin-7-like. (552 aa)
	LOC107548577	Rab-interacting lysosomal protein. (476 aa)
	LOC107602073	Ras-related protein Rab-7a-like isoform X1. (205 aa)
	LOC107554658	Ras-related protein Rab-9B-like. (202 aa)
	ENSSGRP00000087361	RAB38b, member of RAS oncogene family. (101 aa)
	LOC107554197	Ras-related protein Rab-22A-like. (196 aa)
	LOC107553159	Ras-related protein Rab-7a-like. (207 aa)
	LOC107597981	Toll-like receptor 2. (841 aa)
	pip4p1	Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase. (307 aa)
	LOC107588217	Ras-related protein Rab-38-like. (224 aa)
	ENSSGRP00000094206	Zgc:162171. (80 aa)
	LOC107586618	Ras-related protein Rab-32-like. (210 aa)
	ENSSGRP00000097325	RAB32b, member RAS oncogene family. (211 aa)
	LOC107588842	Ras-related protein Rab-9A-like. (201 aa)
	LOC107588842-2	Ras-related protein Rab-9A-like. (201 aa)
	ENSSGRP00000101541	annotation not available (137 aa)
	LOC107559615	Toll-like receptor 1. (797 aa)
	ENSSGRP00000104498	1-phosphatidylinositol 3-phosphate 5-kinase-like. (1983 aa)
	LOC107557781-2	Ras-related protein Rab-7a. (207 aa)
	LOC107595854	1-phosphatidylinositol 3-phosphate 5-kinase-like isoform X1. (2100 aa)
	ENSSGRP00000108950	annotation not available (93 aa)
	LOC107550762	Lysosome-associated membrane glycoprotein 2-like. (380 aa)
	LOC107550756	Inositol polyphosphate 5-phosphatase OCRL-1-like isoform X1. (954 aa)
	ENSSGRP00000000129	Toll-like receptor 2. (805 aa)
	ENSSGRP00000002432	annotation not available (665 aa)
	ENSSGRP00000002761	Ras-related protein Rab-38-like. (220 aa)
	ENSSGRP00000003540	Ras-related protein Rab-32-like. (172 aa)
	ENSSGRP00000004904	Vesicle-associated membrane protein 7-like. (177 aa)
	ENSSGRP00000005501	annotation not available (85 aa)
	ENSSGRP00000009285	Synaptotagmin-7-like isoform X1. (331 aa)
	ENSSGRP00000013379	Toll-like receptor 18. (610 aa)
	ENSSGRP00000016831	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1b. (272 aa)
	ENSSGRP00000017085	annotation not available (186 aa)
	ENSSGRP00000017666	Ras-related protein Rab-9B-like. (211 aa)
	ENSSGRP00000018833	annotation not available (165 aa)
	RAB38	Ras-related protein Rab-38-like. (211 aa)
	ENSSGRP00000025245	annotation not available (111 aa)
	ENSSGRP00000028703	Lysosome-associated membrane glycoprotein 1-like. (295 aa)
	ENSSGRP00000031886	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2. (244 aa)
	LOC107588983	Ras-related protein Rab-7a-like. (205 aa)
	LOC107590711	Toll-like receptor 2 type-2 isoform X1. (790 aa)
	ENSSGRP00000041811	Type I phosphatidylinositol 4,5-bisphosphate 4-phosphatase-B. (265 aa)
	ENSSGRP00000043002	annotation not available (186 aa)
	rab31	Ras-related protein Rab-22. (194 aa)
	vamp7	Vesicle-associated membrane protein 7. (220 aa)
	ENSSGRP00000048953	Lysosome-associated membrane glycoprotein 1-like. (214 aa)
	Tmem55a	Type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase. (202 aa)
	LOC107560181	Inositol polyphosphate 5-phosphatase OCRL-1-like isoform X1. (950 aa)
	LOC107594109	Ras-related protein Rab-32-like. (208 aa)
	rab9a	Ras-related protein Rab-9A. (201 aa)
	ENSSGRP00000053630	Synaptotagmin-7-like. (485 aa)
	LOC107560251	Lysosome-associated membrane glycoprotein 2-like. (311 aa)
	RAB38-2	RAB38, member RAS oncogene family. (190 aa)
	LOC107557212	Ras-related protein Rab-38-like. (214 aa)
	ENSSGRP00000061045	Synaptotagmin VIIb. (476 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000129	LOC107590711	ENSSGRP00000000129	ENSSGRP00000037361	Toll-like receptor 2.	Toll-like receptor 2 type-2 isoform X1.	0.900
ENSSGRP00000000129	LOC107597981	ENSSGRP00000000129	ENSSGRP00000091104	Toll-like receptor 2.	Toll-like receptor 2.	0.900
ENSSGRP00000004904	ENSSGRP00000009285	ENSSGRP00000004904	ENSSGRP00000009285	Vesicle-associated membrane protein 7-like.	Synaptotagmin-7-like isoform X1.	0.552
ENSSGRP00000004904	ENSSGRP00000028703	ENSSGRP00000004904	ENSSGRP00000028703	Vesicle-associated membrane protein 7-like.	Lysosome-associated membrane glycoprotein 1-like.	0.418
ENSSGRP00000004904	ENSSGRP00000048953	ENSSGRP00000004904	ENSSGRP00000048953	Vesicle-associated membrane protein 7-like.	Lysosome-associated membrane glycoprotein 1-like.	0.418
ENSSGRP00000004904	ENSSGRP00000053630	ENSSGRP00000004904	ENSSGRP00000053630	Vesicle-associated membrane protein 7-like.	Synaptotagmin-7-like.	0.552
ENSSGRP00000004904	ENSSGRP00000061045	ENSSGRP00000004904	ENSSGRP00000061045	Vesicle-associated membrane protein 7-like.	Synaptotagmin VIIb.	0.552
ENSSGRP00000004904	ENSSGRP00000078238	ENSSGRP00000004904	ENSSGRP00000078238	Vesicle-associated membrane protein 7-like.	Synaptotagmin-7-like.	0.552
ENSSGRP00000004904	vamp7	ENSSGRP00000004904	ENSSGRP00000045080	Vesicle-associated membrane protein 7-like.	Vesicle-associated membrane protein 7.	0.901
ENSSGRP00000005501	ENSSGRP00000101541	ENSSGRP00000005501	ENSSGRP00000101541	annotation not available	annotation not available	0.489
ENSSGRP00000005501	LOC107554197	ENSSGRP00000005501	ENSSGRP00000088760	annotation not available	Ras-related protein Rab-22A-like.	0.465
ENSSGRP00000005501	LOC107596793	ENSSGRP00000005501	ENSSGRP00000074468	annotation not available	Ras-related protein Rab-22A isoform X1.	0.465
ENSSGRP00000005501	rab31	ENSSGRP00000005501	ENSSGRP00000043902	annotation not available	Ras-related protein Rab-22.	0.467
ENSSGRP00000009285	ENSSGRP00000004904	ENSSGRP00000009285	ENSSGRP00000004904	Synaptotagmin-7-like isoform X1.	Vesicle-associated membrane protein 7-like.	0.552
ENSSGRP00000009285	ENSSGRP00000017085	ENSSGRP00000009285	ENSSGRP00000017085	Synaptotagmin-7-like isoform X1.	annotation not available	0.552
ENSSGRP00000009285	vamp7	ENSSGRP00000009285	ENSSGRP00000045080	Synaptotagmin-7-like isoform X1.	Vesicle-associated membrane protein 7.	0.552
ENSSGRP00000017085	ENSSGRP00000009285	ENSSGRP00000017085	ENSSGRP00000009285	annotation not available	Synaptotagmin-7-like isoform X1.	0.552
ENSSGRP00000017085	ENSSGRP00000028703	ENSSGRP00000017085	ENSSGRP00000028703	annotation not available	Lysosome-associated membrane glycoprotein 1-like.	0.418
ENSSGRP00000017085	ENSSGRP00000048953	ENSSGRP00000017085	ENSSGRP00000048953	annotation not available	Lysosome-associated membrane glycoprotein 1-like.	0.418
ENSSGRP00000017085	ENSSGRP00000053630	ENSSGRP00000017085	ENSSGRP00000053630	annotation not available	Synaptotagmin-7-like.	0.552