(26 nodes) Sarcoplasmic reticulum lumen network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107592842	Mesencephalic astrocyte-derived neurotrophic factor-like. (180 aa)
	ENSSGRP00000016581	Calsequestrin-1-like. (373 aa)
	ENSSGRP00000016144	Heat shock protein 90kDa beta. (639 aa)
	LOC107557893	Calsequestrin-1-like. (478 aa)
	ENSSGRP00000012262	Endoplasmin-like. (55 aa)
	LOC107563200	Reticulocalbin-1-like. (320 aa)
	ENSSGRP00000005379	Sarcalumenin-like. (130 aa)
	LOC107578970	Calumenin-A-like. (317 aa)
	SRL	Sarcalumenin-like isoform X1. (797 aa)
	ENSSGRP00000008351	annotation not available (245 aa)
	LOC107592208	Heat shock protein 90kDa beta. (524 aa)
	ENSSGRP00000049428	Sarcalumenin. (154 aa)
	ENSSGRP00000049426	Sarcalumenin. (183 aa)
	ENSSGRP00000049425	Sarcalumenin. (186 aa)
	LOC107594756	Reticulocalbin-1. (165 aa)
	LOC107587143	Calumenin-A isoform X1. (317 aa)
	ENSSGRP00000092420	Heat shock protein 90kDa beta. (675 aa)
	LOC107553668	Sarcalumenin-like isoform X1. (490 aa)
	ENSSGRP00000100254	annotation not available (376 aa)
	LOC107595834	Calsequestrin-2-like. (419 aa)
	LOC107569839	Calsequestrin-2-like. (418 aa)
	ENSSGRP00000078680	Calsequestrin 1a. (536 aa)
	ENSSGRP00000077456	Sarcalumenin-like. (162 aa)
	LOC107569332	Calsequestrin-1-like isoform X1. (435 aa)
	LOC107567190	Mesencephalic astrocyte-derived neurotrophic factor-like. (181 aa)
	ENSSGRP00000064710	Calsequestrin-2-like isoform X1. (425 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000012262	LOC107567190	ENSSGRP00000012262	ENSSGRP00000071417	Endoplasmin-like.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
ENSSGRP00000012262	LOC107592842	ENSSGRP00000012262	ENSSGRP00000043268	Endoplasmin-like.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
ENSSGRP00000016144	ENSSGRP00000092420	ENSSGRP00000016144	ENSSGRP00000092420	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.900
ENSSGRP00000016144	LOC107567190	ENSSGRP00000016144	ENSSGRP00000071417	Heat shock protein 90kDa beta.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
ENSSGRP00000016144	LOC107592208	ENSSGRP00000016144	ENSSGRP00000050091	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.902
ENSSGRP00000016144	LOC107592842	ENSSGRP00000016144	ENSSGRP00000043268	Heat shock protein 90kDa beta.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
ENSSGRP00000016581	ENSSGRP00000077456	ENSSGRP00000016581	ENSSGRP00000077456	Calsequestrin-1-like.	Sarcalumenin-like.	0.437
ENSSGRP00000016581	SRL	ENSSGRP00000016581	ENSSGRP00000112202	Calsequestrin-1-like.	Sarcalumenin-like isoform X1.	0.437
ENSSGRP00000064710	LOC107569839	ENSSGRP00000064710	ENSSGRP00000105915	Calsequestrin-2-like isoform X1.	Calsequestrin-2-like.	0.901
ENSSGRP00000064710	LOC107595834	ENSSGRP00000064710	ENSSGRP00000105324	Calsequestrin-2-like isoform X1.	Calsequestrin-2-like.	0.901
ENSSGRP00000077456	ENSSGRP00000016581	ENSSGRP00000077456	ENSSGRP00000016581	Sarcalumenin-like.	Calsequestrin-1-like.	0.437
ENSSGRP00000077456	LOC107569332	ENSSGRP00000077456	ENSSGRP00000074798	Sarcalumenin-like.	Calsequestrin-1-like isoform X1.	0.437
ENSSGRP00000077456	LOC107569839	ENSSGRP00000077456	ENSSGRP00000105915	Sarcalumenin-like.	Calsequestrin-2-like.	0.462
ENSSGRP00000077456	LOC107595834	ENSSGRP00000077456	ENSSGRP00000105324	Sarcalumenin-like.	Calsequestrin-2-like.	0.462
ENSSGRP00000092420	ENSSGRP00000016144	ENSSGRP00000092420	ENSSGRP00000016144	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.900
ENSSGRP00000092420	LOC107567190	ENSSGRP00000092420	ENSSGRP00000071417	Heat shock protein 90kDa beta.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
ENSSGRP00000092420	LOC107592208	ENSSGRP00000092420	ENSSGRP00000050091	Heat shock protein 90kDa beta.	Heat shock protein 90kDa beta.	0.902
ENSSGRP00000092420	LOC107592842	ENSSGRP00000092420	ENSSGRP00000043268	Heat shock protein 90kDa beta.	Mesencephalic astrocyte-derived neurotrophic factor-like.	0.615
LOC107567190	ENSSGRP00000012262	ENSSGRP00000071417	ENSSGRP00000012262	Mesencephalic astrocyte-derived neurotrophic factor-like.	Endoplasmin-like.	0.615
LOC107567190	ENSSGRP00000016144	ENSSGRP00000071417	ENSSGRP00000016144	Mesencephalic astrocyte-derived neurotrophic factor-like.	Heat shock protein 90kDa beta.	0.615