(35 nodes) Centromere complex assembly network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107588571	Opa-interacting protein 5. (191 aa)
	LOC107567292	Centromere protein N-like. (343 aa)
	ENSSGRP00000001237	Pogo transposable element derived with ZNF domain a. (1290 aa)
	LOC107584584	Centromere protein T-like isoform X1. (745 aa)
	LOC107551040	Histone-binding protein N1/N2-like isoform X1. (560 aa)
	cenph	Centromere protein H. (231 aa)
	ENSSGRP00000012687	LOW QUALITY PROTEIN: centromere protein X-like. (103 aa)
	LOC107584128	Disks large-associated protein 5-like isoform X1. (916 aa)
	ENSSGRP00000015274	Kinetochore-associated protein 1-like. (2207 aa)
	ENSSGRP00000018224	annotation not available (213 aa)
	ENSSGRP00000018225	annotation not available (359 aa)
	LOC107579067	Kinetochore protein Mis18. (134 aa)
	LOC107571303	Centromere protein X-like. (71 aa)
	LOC107600551	Centromere protein W-like isoform X1. (84 aa)
	LOC107589556	Lymphocyte-specific helicase-like. (882 aa)
	LOC107594614	Histone-binding protein N1/N2-like isoform X1. (585 aa)
	LOC107560443	Centromere protein I-like. (733 aa)
	ENSSGRP00000051098	Centromere protein P-like. (159 aa)
	cenpo	Centromere protein O. (286 aa)
	mis12	Kinetochore-associated protein MIS12. (215 aa)
	ENSSGRP00000061199	Discs, large (Drosophila) homolog-associated protein 5. (875 aa)
	LOC107565337	Centromere protein N-like. (361 aa)
	cenpk	Centromere protein K isoform X1. (274 aa)
	oip5	Opa-interacting protein 5. (187 aa)
	ENSSGRP00000076285	Sirtuin 6. (350 aa)
	LOC107593065	Centromere protein P isoform X1. (211 aa)
	LOC107586490	Lymphocyte-specific helicase-like. (854 aa)
	LOC107600795	Kinetochore-associated protein MIS12. (215 aa)
	LOC107567752	Centromere protein W-like. (75 aa)
	ENSSGRP00000084710	Pogo transposable element derived with ZNF domain a. (1373 aa)
	LOC107553589	Centromere protein V-like. (180 aa)
	ENSSGRP00000101525	NAD-dependent protein deacetylase sirtuin-6-like. (362 aa)
	LOC107552586	Centromere protein V-like. (192 aa)
	LOC107593211	Centromere protein I-like. (730 aa)
	ENSSGRP00000112747	Centromere protein O. (298 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001237	ENSSGRP00000051098	ENSSGRP00000001237	ENSSGRP00000051098	Pogo transposable element derived with ZNF domain a.	Centromere protein P-like.	0.442
ENSSGRP00000001237	LOC107586490	ENSSGRP00000001237	ENSSGRP00000077792	Pogo transposable element derived with ZNF domain a.	Lymphocyte-specific helicase-like.	0.435
ENSSGRP00000001237	LOC107589556	ENSSGRP00000001237	ENSSGRP00000042783	Pogo transposable element derived with ZNF domain a.	Lymphocyte-specific helicase-like.	0.435
ENSSGRP00000001237	LOC107593065	ENSSGRP00000001237	ENSSGRP00000077348	Pogo transposable element derived with ZNF domain a.	Centromere protein P isoform X1.	0.442
ENSSGRP00000012687	LOC107567752	ENSSGRP00000012687	ENSSGRP00000081432	LOW QUALITY PROTEIN: centromere protein X-like.	Centromere protein W-like.	0.577
ENSSGRP00000012687	LOC107571303	ENSSGRP00000012687	ENSSGRP00000030700	LOW QUALITY PROTEIN: centromere protein X-like.	Centromere protein X-like.	0.901
ENSSGRP00000012687	LOC107584584	ENSSGRP00000012687	ENSSGRP00000002572	LOW QUALITY PROTEIN: centromere protein X-like.	Centromere protein T-like isoform X1.	0.829
ENSSGRP00000012687	LOC107600551	ENSSGRP00000012687	ENSSGRP00000039107	LOW QUALITY PROTEIN: centromere protein X-like.	Centromere protein W-like isoform X1.	0.577
ENSSGRP00000015274	ENSSGRP00000061199	ENSSGRP00000015274	ENSSGRP00000061199	Kinetochore-associated protein 1-like.	Discs, large (Drosophila) homolog-associated protein 5.	0.861
ENSSGRP00000015274	LOC107560443	ENSSGRP00000015274	ENSSGRP00000044981	Kinetochore-associated protein 1-like.	Centromere protein I-like.	0.704
ENSSGRP00000015274	LOC107565337	ENSSGRP00000015274	ENSSGRP00000062416	Kinetochore-associated protein 1-like.	Centromere protein N-like.	0.551
ENSSGRP00000015274	LOC107567292	ENSSGRP00000015274	ENSSGRP00000000475	Kinetochore-associated protein 1-like.	Centromere protein N-like.	0.551
ENSSGRP00000015274	LOC107579067	ENSSGRP00000015274	ENSSGRP00000029788	Kinetochore-associated protein 1-like.	Kinetochore protein Mis18.	0.428
ENSSGRP00000015274	LOC107584128	ENSSGRP00000015274	ENSSGRP00000014156	Kinetochore-associated protein 1-like.	Disks large-associated protein 5-like isoform X1.	0.861
ENSSGRP00000015274	LOC107584584	ENSSGRP00000015274	ENSSGRP00000002572	Kinetochore-associated protein 1-like.	Centromere protein T-like isoform X1.	0.465
ENSSGRP00000015274	LOC107586490	ENSSGRP00000015274	ENSSGRP00000077792	Kinetochore-associated protein 1-like.	Lymphocyte-specific helicase-like.	0.581
ENSSGRP00000015274	LOC107589556	ENSSGRP00000015274	ENSSGRP00000042783	Kinetochore-associated protein 1-like.	Lymphocyte-specific helicase-like.	0.581
ENSSGRP00000015274	LOC107593211	ENSSGRP00000015274	ENSSGRP00000107175	Kinetochore-associated protein 1-like.	Centromere protein I-like.	0.704
ENSSGRP00000015274	cenph	ENSSGRP00000015274	ENSSGRP00000012546	Kinetochore-associated protein 1-like.	Centromere protein H.	0.604
ENSSGRP00000015274	cenpk	ENSSGRP00000015274	ENSSGRP00000064265	Kinetochore-associated protein 1-like.	Centromere protein K isoform X1.	0.614