(24 nodes) Lipoprotein transport network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107590984	Platelet glycoprotein 4-like. (469 aa)
	apob	Apolipoprotein B-100. (4422 aa)
	ENSSGRP00000085656	Platelet glycoprotein 4-like. (372 aa)
	ENSSGRP00000081665	Uncharacterized protein LOC107554077. (210 aa)
	LOC107548572	Protein unc-119 homolog A-like isoform X1. (204 aa)
	ENSSGRP00000078331	Apolipoprotein B-100-like isoform X1. (3739 aa)
	ENSSGRP00000062858	Unc-119 homolog a (C. elegans). (144 aa)
	ENSSGRP00000059302	Apolipoprotein B-100-like. (741 aa)
	ENSSGRP00000049681	Apolipoprotein B-100-like. (563 aa)
	unc119b	Protein unc-119 homolog B. (244 aa)
	ENSSGRP00000017476	Surfeit locus protein 4-like. (197 aa)
	LOC107582631	Vacuole membrane protein 1-like. (382 aa)
	LOC107564590	Apolipoprotein B-100-like. (2652 aa)
	LOC107549128	Apolipoprotein B-100-like. (3758 aa)
	LOC107550938	Protein unc-119 homolog B-like. (244 aa)
	LOC107583101	Protein unc-119 homolog B-like. (245 aa)
	ENSSGRP00000108893	Uncharacterized protein LOC107587222 isoform X1. (156 aa)
	LOC107557955	Microsomal triglyceride transfer protein large subunit-like. (910 aa)
	ENSSGRP00000091822	Vacuole membrane protein 1. (395 aa)
	ENSSGRP00000091384	Protein unc-119 homolog A-like. (135 aa)
	ENSSGRP00000089527	annotation not available (68 aa)
	ENSSGRP00000008111	ER-derived vesicles protein. (268 aa)
	ENSSGRP00000009564	annotation not available (64 aa)
	LOC107564103	Microsomal triglyceride transfer protein large subunit-like. (886 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009564	ENSSGRP00000049681	ENSSGRP00000009564	ENSSGRP00000049681	annotation not available	Apolipoprotein B-100-like.	0.673
ENSSGRP00000009564	ENSSGRP00000059302	ENSSGRP00000009564	ENSSGRP00000059302	annotation not available	Apolipoprotein B-100-like.	0.673
ENSSGRP00000009564	ENSSGRP00000078331	ENSSGRP00000009564	ENSSGRP00000078331	annotation not available	Apolipoprotein B-100-like isoform X1.	0.673
ENSSGRP00000009564	LOC107549128	ENSSGRP00000009564	ENSSGRP00000056378	annotation not available	Apolipoprotein B-100-like.	0.673
ENSSGRP00000009564	LOC107564590	ENSSGRP00000009564	ENSSGRP00000013207	annotation not available	Apolipoprotein B-100-like.	0.673
ENSSGRP00000009564	apob	ENSSGRP00000009564	ENSSGRP00000086333	annotation not available	Apolipoprotein B-100.	0.673
ENSSGRP00000049681	ENSSGRP00000009564	ENSSGRP00000049681	ENSSGRP00000009564	Apolipoprotein B-100-like.	annotation not available	0.673
ENSSGRP00000049681	ENSSGRP00000085656	ENSSGRP00000049681	ENSSGRP00000085656	Apolipoprotein B-100-like.	Platelet glycoprotein 4-like.	0.673
ENSSGRP00000049681	ENSSGRP00000089527	ENSSGRP00000049681	ENSSGRP00000089527	Apolipoprotein B-100-like.	annotation not available	0.673
ENSSGRP00000049681	LOC107557955	ENSSGRP00000049681	ENSSGRP00000095184	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein large subunit-like.	0.923
ENSSGRP00000049681	LOC107564103	ENSSGRP00000049681	ENSSGRP00000000764	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein large subunit-like.	0.923
ENSSGRP00000049681	LOC107590984	ENSSGRP00000049681	ENSSGRP00000089525	Apolipoprotein B-100-like.	Platelet glycoprotein 4-like.	0.673
ENSSGRP00000059302	ENSSGRP00000009564	ENSSGRP00000059302	ENSSGRP00000009564	Apolipoprotein B-100-like.	annotation not available	0.673
ENSSGRP00000059302	ENSSGRP00000085656	ENSSGRP00000059302	ENSSGRP00000085656	Apolipoprotein B-100-like.	Platelet glycoprotein 4-like.	0.673
ENSSGRP00000059302	ENSSGRP00000089527	ENSSGRP00000059302	ENSSGRP00000089527	Apolipoprotein B-100-like.	annotation not available	0.673
ENSSGRP00000059302	LOC107557955	ENSSGRP00000059302	ENSSGRP00000095184	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein large subunit-like.	0.923
ENSSGRP00000059302	LOC107564103	ENSSGRP00000059302	ENSSGRP00000000764	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein large subunit-like.	0.923
ENSSGRP00000059302	LOC107590984	ENSSGRP00000059302	ENSSGRP00000089525	Apolipoprotein B-100-like.	Platelet glycoprotein 4-like.	0.673
ENSSGRP00000078331	ENSSGRP00000009564	ENSSGRP00000078331	ENSSGRP00000009564	Apolipoprotein B-100-like isoform X1.	annotation not available	0.673
ENSSGRP00000078331	ENSSGRP00000085656	ENSSGRP00000078331	ENSSGRP00000085656	Apolipoprotein B-100-like isoform X1.	Platelet glycoprotein 4-like.	0.673