(6 nodes) snoRNA localization network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000107996	annotation not available (65 aa)
	LOC107562203	Zinc finger HIT domain-containing protein 3-like. (148 aa)
	LOC107570413	Box C/D snoRNA protein 1-like. (459 aa)
	nop58	Nucleolar protein 58 isoform X1. (548 aa)
	ENSSGRP00000040387	Box C/D snoRNA protein 1-like isoform X1. (253 aa)
	LOC107591473	Zinc finger HIT domain-containing protein 3-like. (150 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000040387	ENSSGRP00000107996	ENSSGRP00000040387	ENSSGRP00000107996	Box C/D snoRNA protein 1-like isoform X1.	annotation not available	0.870
ENSSGRP00000040387	LOC107562203	ENSSGRP00000040387	ENSSGRP00000081756	Box C/D snoRNA protein 1-like isoform X1.	Zinc finger HIT domain-containing protein 3-like.	0.653
ENSSGRP00000040387	LOC107591473	ENSSGRP00000040387	ENSSGRP00000087916	Box C/D snoRNA protein 1-like isoform X1.	Zinc finger HIT domain-containing protein 3-like.	0.653
ENSSGRP00000040387	nop58	ENSSGRP00000040387	ENSSGRP00000059894	Box C/D snoRNA protein 1-like isoform X1.	Nucleolar protein 58 isoform X1.	0.870
ENSSGRP00000107996	ENSSGRP00000040387	ENSSGRP00000107996	ENSSGRP00000040387	annotation not available	Box C/D snoRNA protein 1-like isoform X1.	0.870
ENSSGRP00000107996	LOC107562203	ENSSGRP00000107996	ENSSGRP00000081756	annotation not available	Zinc finger HIT domain-containing protein 3-like.	0.528
ENSSGRP00000107996	LOC107570413	ENSSGRP00000107996	ENSSGRP00000068424	annotation not available	Box C/D snoRNA protein 1-like.	0.870
ENSSGRP00000107996	LOC107591473	ENSSGRP00000107996	ENSSGRP00000087916	annotation not available	Zinc finger HIT domain-containing protein 3-like.	0.528
LOC107562203	ENSSGRP00000040387	ENSSGRP00000081756	ENSSGRP00000040387	Zinc finger HIT domain-containing protein 3-like.	Box C/D snoRNA protein 1-like isoform X1.	0.653
LOC107562203	ENSSGRP00000107996	ENSSGRP00000081756	ENSSGRP00000107996	Zinc finger HIT domain-containing protein 3-like.	annotation not available	0.528
LOC107562203	LOC107570413	ENSSGRP00000081756	ENSSGRP00000068424	Zinc finger HIT domain-containing protein 3-like.	Box C/D snoRNA protein 1-like.	0.653
LOC107562203	nop58	ENSSGRP00000081756	ENSSGRP00000059894	Zinc finger HIT domain-containing protein 3-like.	Nucleolar protein 58 isoform X1.	0.528
LOC107570413	ENSSGRP00000107996	ENSSGRP00000068424	ENSSGRP00000107996	Box C/D snoRNA protein 1-like.	annotation not available	0.870
LOC107570413	LOC107562203	ENSSGRP00000068424	ENSSGRP00000081756	Box C/D snoRNA protein 1-like.	Zinc finger HIT domain-containing protein 3-like.	0.653
LOC107570413	LOC107591473	ENSSGRP00000068424	ENSSGRP00000087916	Box C/D snoRNA protein 1-like.	Zinc finger HIT domain-containing protein 3-like.	0.653
LOC107570413	nop58	ENSSGRP00000068424	ENSSGRP00000059894	Box C/D snoRNA protein 1-like.	Nucleolar protein 58 isoform X1.	0.870
LOC107591473	ENSSGRP00000040387	ENSSGRP00000087916	ENSSGRP00000040387	Zinc finger HIT domain-containing protein 3-like.	Box C/D snoRNA protein 1-like isoform X1.	0.653
LOC107591473	ENSSGRP00000107996	ENSSGRP00000087916	ENSSGRP00000107996	Zinc finger HIT domain-containing protein 3-like.	annotation not available	0.528
LOC107591473	LOC107570413	ENSSGRP00000087916	ENSSGRP00000068424	Zinc finger HIT domain-containing protein 3-like.	Box C/D snoRNA protein 1-like.	0.653
LOC107591473	nop58	ENSSGRP00000087916	ENSSGRP00000059894	Zinc finger HIT domain-containing protein 3-like.	Nucleolar protein 58 isoform X1.	0.528