(35 nodes) Determination of ventral identity network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107595463	Growth/differentiation factor 5-like. (491 aa)
	chrd	Chordin. (938 aa)
	LOC107593250	Bone morphogenetic protein 2-like. (411 aa)
	LOC107552600	Zinc finger RNA-binding protein isoform X1. (1070 aa)
	LOC107591552	Dorsal-ventral patterning tolloid-like protein 1 isoform X1. (1022 aa)
	ENSSGRP00000004699	Homeobox protein vent1-like. (181 aa)
	ENSSGRP00000007620	Serine/threonine-protein phosphatase 4 catalytic subunit B-like. (132 aa)
	LOC107590569	Serine/threonine-protein phosphatase 4 catalytic subunit B-like. (311 aa)
	ENSSGRP00000018274	Zinc finger RNA-binding protein-like. (137 aa)
	ENSSGRP00000022067	Bone morphogenetic protein 2-like. (332 aa)
	LOC107548346	Dorsal-ventral patterning tolloid-like protein 1. (1022 aa)
	ENSSGRP00000023816	annotation not available (66 aa)
	LOC107551190	Growth/differentiation factor 6-A-like. (405 aa)
	LOC107566358	Zinc finger RNA-binding protein-like isoform X1. (560 aa)
	LOC107552890	Bone morphogenetic protein 2-like. (388 aa)
	ENSSGRP00000036217	annotation not available (113 aa)
	ENSSGRP00000036219	Mothers against decapentaplegic homolog 1-like. (181 aa)
	LOC107587642	Growth/differentiation factor 5-like. (499 aa)
	ENSSGRP00000041345	Chordin-like. (861 aa)
	ift46	Intraflagellar transport protein 46 homolog isoform X1. (381 aa)
	ENSSGRP00000050593	Homeobox protein vent1-like. (227 aa)
	LOC107600621	Growth/differentiation factor 6-A. (405 aa)
	LOC107563595	Mothers against decapentaplegic homolog 5 isoform X1. (464 aa)
	LOC107602019	Zinc finger RNA-binding protein-like. (1061 aa)
	LOC107562012	Serine/threonine-protein phosphatase 4 catalytic subunit B isoform X1. (312 aa)
	max	Protein max isoform X1. (165 aa)
	bmp2	Bone morphogenetic protein 2. (388 aa)
	LOC107568227	Axin interactor, dorsalization-associated protein. (302 aa)
	ENSSGRP00000068648	Bone morphogenetic protein 1-like. (977 aa)
	ENSSGRP00000086041	annotation not available (141 aa)
	LOC107553124	Bone morphogenetic protein 1-like. (955 aa)
	ENSSGRP00000092294	Zinc finger RNA-binding protein-like. (596 aa)
	ENSSGRP00000092297	annotation not available (126 aa)
	LOC107567834	Serine/threonine-protein phosphatase 4 catalytic subunit B-like. (311 aa)
	LOC107602050	Max protein. (156 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000022067	ENSSGRP00000023816	ENSSGRP00000022067	ENSSGRP00000023816	Bone morphogenetic protein 2-like.	annotation not available	0.433
ENSSGRP00000022067	ENSSGRP00000036217	ENSSGRP00000022067	ENSSGRP00000036217	Bone morphogenetic protein 2-like.	annotation not available	0.755
ENSSGRP00000022067	ENSSGRP00000036219	ENSSGRP00000022067	ENSSGRP00000036219	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog 1-like.	0.699
ENSSGRP00000022067	ENSSGRP00000041345	ENSSGRP00000022067	ENSSGRP00000041345	Bone morphogenetic protein 2-like.	Chordin-like.	0.902
ENSSGRP00000022067	LOC107548346	ENSSGRP00000022067	ENSSGRP00000023623	Bone morphogenetic protein 2-like.	Dorsal-ventral patterning tolloid-like protein 1.	0.433
ENSSGRP00000022067	LOC107563595	ENSSGRP00000022067	ENSSGRP00000051610	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog 5 isoform X1.	0.699
ENSSGRP00000022067	LOC107591552	ENSSGRP00000022067	ENSSGRP00000101323	Bone morphogenetic protein 2-like.	Dorsal-ventral patterning tolloid-like protein 1 isoform X1.	0.433
ENSSGRP00000022067	chrd	ENSSGRP00000022067	ENSSGRP00000106203	Bone morphogenetic protein 2-like.	Chordin.	0.902
ENSSGRP00000023816	ENSSGRP00000022067	ENSSGRP00000023816	ENSSGRP00000022067	annotation not available	Bone morphogenetic protein 2-like.	0.433
ENSSGRP00000023816	ENSSGRP00000041345	ENSSGRP00000023816	ENSSGRP00000041345	annotation not available	Chordin-like.	0.843
ENSSGRP00000023816	LOC107593250	ENSSGRP00000023816	ENSSGRP00000108210	annotation not available	Bone morphogenetic protein 2-like.	0.433
ENSSGRP00000023816	chrd	ENSSGRP00000023816	ENSSGRP00000106203	annotation not available	Chordin.	0.843
ENSSGRP00000036217	ENSSGRP00000022067	ENSSGRP00000036217	ENSSGRP00000022067	annotation not available	Bone morphogenetic protein 2-like.	0.755
ENSSGRP00000036217	ENSSGRP00000036219	ENSSGRP00000036217	ENSSGRP00000036219	annotation not available	Mothers against decapentaplegic homolog 1-like.	0.498
ENSSGRP00000036217	ENSSGRP00000041345	ENSSGRP00000036217	ENSSGRP00000041345	annotation not available	Chordin-like.	0.458
ENSSGRP00000036217	LOC107552890	ENSSGRP00000036217	ENSSGRP00000035716	annotation not available	Bone morphogenetic protein 2-like.	0.627
ENSSGRP00000036217	LOC107593250	ENSSGRP00000036217	ENSSGRP00000108210	annotation not available	Bone morphogenetic protein 2-like.	0.699
ENSSGRP00000036217	bmp2	ENSSGRP00000036217	ENSSGRP00000055548	annotation not available	Bone morphogenetic protein 2.	0.627
ENSSGRP00000036217	chrd	ENSSGRP00000036217	ENSSGRP00000106203	annotation not available	Chordin.	0.458
ENSSGRP00000036219	ENSSGRP00000022067	ENSSGRP00000036219	ENSSGRP00000022067	Mothers against decapentaplegic homolog 1-like.	Bone morphogenetic protein 2-like.	0.699