(14 nodes) Positive regulation of pinocytosis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000044164	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (324 aa)
	LOC107565741	DCC-interacting protein 13-beta-like. (664 aa)
	LOC107597410	Rabankyrin-5-like. (1169 aa)
	ENSSGRP00000025128	DCC-interacting protein 13-beta-like. (658 aa)
	ENSSGRP00000024719	HESX homeobox 1. (656 aa)
	LOC107552852	Cell division control protein 42 homolog isoform X1. (191 aa)
	LOC107589449	Palmitoyl-protein thioesterase 1-like. (303 aa)
	LOC107580157	Cdc42 homolog. (115 aa)
	ENSSGRP00000004211	annotation not available (110 aa)
	appl1	DCC-interacting protein 13-alpha isoform X1. (714 aa)
	ENSSGRP00000091260	Battenin-like isoform X1. (445 aa)
	ENSSGRP00000079890	Cell division control protein 42 homolog isoform X1. (197 aa)
	cdc42	Cell division control protein 42 homolog isoform X1. (191 aa)
	LOC107581771	Battenin-like. (393 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004211	LOC107597410	ENSSGRP00000004211	ENSSGRP00000025781	annotation not available	Rabankyrin-5-like.	0.577
ENSSGRP00000024719	ENSSGRP00000025128	ENSSGRP00000024719	ENSSGRP00000025128	HESX homeobox 1.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000024719	LOC107565741	ENSSGRP00000024719	ENSSGRP00000035870	HESX homeobox 1.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000024719	LOC107597410	ENSSGRP00000024719	ENSSGRP00000025781	HESX homeobox 1.	Rabankyrin-5-like.	0.666
ENSSGRP00000024719	appl1	ENSSGRP00000024719	ENSSGRP00000107002	HESX homeobox 1.	DCC-interacting protein 13-alpha isoform X1.	0.995
ENSSGRP00000025128	ENSSGRP00000024719	ENSSGRP00000025128	ENSSGRP00000024719	DCC-interacting protein 13-beta-like.	HESX homeobox 1.	0.995
ENSSGRP00000025128	LOC107565741	ENSSGRP00000025128	ENSSGRP00000035870	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000025128	LOC107597410	ENSSGRP00000025128	ENSSGRP00000025781	DCC-interacting protein 13-beta-like.	Rabankyrin-5-like.	0.666
ENSSGRP00000025128	appl1	ENSSGRP00000025128	ENSSGRP00000107002	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha isoform X1.	0.995
ENSSGRP00000044164	ENSSGRP00000091260	ENSSGRP00000044164	ENSSGRP00000091260	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	Battenin-like isoform X1.	0.649
ENSSGRP00000044164	LOC107581771	ENSSGRP00000044164	ENSSGRP00000050224	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	Battenin-like.	0.649
ENSSGRP00000079890	LOC107552852	ENSSGRP00000079890	ENSSGRP00000024332	Cell division control protein 42 homolog isoform X1.	Cell division control protein 42 homolog isoform X1.	0.901
ENSSGRP00000079890	LOC107597410	ENSSGRP00000079890	ENSSGRP00000025781	Cell division control protein 42 homolog isoform X1.	Rabankyrin-5-like.	0.577
ENSSGRP00000079890	cdc42	ENSSGRP00000079890	ENSSGRP00000078702	Cell division control protein 42 homolog isoform X1.	Cell division control protein 42 homolog isoform X1.	0.901
ENSSGRP00000091260	ENSSGRP00000044164	ENSSGRP00000091260	ENSSGRP00000044164	Battenin-like isoform X1.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.649
ENSSGRP00000091260	LOC107581771	ENSSGRP00000091260	ENSSGRP00000050224	Battenin-like isoform X1.	Battenin-like.	0.900
ENSSGRP00000091260	LOC107589449	ENSSGRP00000091260	ENSSGRP00000016853	Battenin-like isoform X1.	Palmitoyl-protein thioesterase 1-like.	0.649
LOC107552852	ENSSGRP00000079890	ENSSGRP00000024332	ENSSGRP00000079890	Cell division control protein 42 homolog isoform X1.	Cell division control protein 42 homolog isoform X1.	0.901
LOC107552852	LOC107597410	ENSSGRP00000024332	ENSSGRP00000025781	Cell division control protein 42 homolog isoform X1.	Rabankyrin-5-like.	0.571
LOC107552852	cdc42	ENSSGRP00000024332	ENSSGRP00000078702	Cell division control protein 42 homolog isoform X1.	Cell division control protein 42 homolog isoform X1.	0.900