(5 nodes) C5-methylcytidine-containing RNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107595774	Nuclease-sensitive element-binding protein 1-like isoform X1. (319 aa)
	ENSSGRP00000060924	THO complex subunit 4-like. (178 aa)
	alyref	THO complex subunit 4. (298 aa)
	LOC107602459	Nuclease-sensitive element-binding protein 1-like isoform X1. (321 aa)
	ythdf2	YTH domain-containing family protein 2. (613 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000060924	LOC107595774	ENSSGRP00000060924	ENSSGRP00000060742	THO complex subunit 4-like.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.586
ENSSGRP00000060924	LOC107602459	ENSSGRP00000060924	ENSSGRP00000016743	THO complex subunit 4-like.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.586
ENSSGRP00000060924	alyref	ENSSGRP00000060924	ENSSGRP00000098345	THO complex subunit 4-like.	THO complex subunit 4.	0.901
LOC107595774	ENSSGRP00000060924	ENSSGRP00000060742	ENSSGRP00000060924	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.586
LOC107595774	alyref	ENSSGRP00000060742	ENSSGRP00000098345	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4.	0.586
LOC107602459	ENSSGRP00000060924	ENSSGRP00000016743	ENSSGRP00000060924	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.586
LOC107602459	alyref	ENSSGRP00000016743	ENSSGRP00000098345	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4.	0.586
alyref	ENSSGRP00000060924	ENSSGRP00000098345	ENSSGRP00000060924	THO complex subunit 4.	THO complex subunit 4-like.	0.901
alyref	LOC107595774	ENSSGRP00000098345	ENSSGRP00000060742	THO complex subunit 4.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.586
alyref	LOC107602459	ENSSGRP00000098345	ENSSGRP00000016743	THO complex subunit 4.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.586