(12 nodes) ATPase family associated with various cellular activities (AAA) network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003683	Spastin-like. (413 aa)
	ENSSGRP00000108450	Vacuolar protein sorting 4 homolog B. (396 aa)
	ENSSGRP00000108061	Valosin containing protein. (760 aa)
	ENSSGRP00000103417	annotation not available (730 aa)
	ENSSGRP00000095231	ATPase family AAA domain-containing protein 2B-like. (1331 aa)
	Wrnip1	Putative ATPase. (412 aa)
	ENSSGRP00000045202	Proteasome 26S subunit, ATPase 5. (233 aa)
	ENSSGRP00000042882	BC1 (ubiquinol-cytochrome c reductase) synthesis-like. (266 aa)
	ENSSGRP00000033895	SPG7 matrix AAA peptidase subunit, paraplegin. (705 aa)
	ENSSGRP00000028963	annotation not available (281 aa)
	ENSSGRP00000027720	IQ motif containing with AAA domain 1. (791 aa)
	ENSSGRP00000025648	Spastin. (544 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000003683	ENSSGRP00000045202	Spastin-like.	Proteasome 26S subunit, ATPase 5.	0.420
ENSSGRP00000003683	ENSSGRP00000108450	Spastin-like.	Vacuolar protein sorting 4 homolog B.	0.472
ENSSGRP00000025648	ENSSGRP00000108450	Spastin.	Vacuolar protein sorting 4 homolog B.	0.473
ENSSGRP00000027720	ENSSGRP00000108450	IQ motif containing with AAA domain 1.	Vacuolar protein sorting 4 homolog B.	0.408
ENSSGRP00000045202	ENSSGRP00000003683	Proteasome 26S subunit, ATPase 5.	Spastin-like.	0.420
ENSSGRP00000045202	ENSSGRP00000103417	Proteasome 26S subunit, ATPase 5.	annotation not available	0.718
ENSSGRP00000045202	ENSSGRP00000108061	Proteasome 26S subunit, ATPase 5.	Valosin containing protein.	0.757
ENSSGRP00000103417	ENSSGRP00000045202	annotation not available	Proteasome 26S subunit, ATPase 5.	0.718
ENSSGRP00000108061	ENSSGRP00000045202	Valosin containing protein.	Proteasome 26S subunit, ATPase 5.	0.757
ENSSGRP00000108450	ENSSGRP00000003683	Vacuolar protein sorting 4 homolog B.	Spastin-like.	0.472
ENSSGRP00000108450	ENSSGRP00000025648	Vacuolar protein sorting 4 homolog B.	Spastin.	0.473
ENSSGRP00000108450	ENSSGRP00000027720	Vacuolar protein sorting 4 homolog B.	IQ motif containing with AAA domain 1.	0.408