(16 nodes) Vinculin family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000019399	annotation not available (50 aa)
	ctnna2	Catenin alpha-2. (558 aa)
	LOC107601794	Vinculin-like. (1077 aa)
	LOC107573466	Catenin alpha-2-like. (345 aa)
	ENSSGRP00000006060	annotation not available (115 aa)
	ENSSGRP00000004794	LOW QUALITY PROTEIN: vinculin-like. (67 aa)
	ENSSGRP00000097096	annotation not available (758 aa)
	ENSSGRP00000099995	Alpha-catulin-like. (702 aa)
	ENSSGRP00000103843	Catenin alpha-1. (906 aa)
	Ctnnal1	Alpha-catulin isoform X1. (751 aa)
	ENSSGRP00000077979	Catenin alpha-2-like. (367 aa)
	ENSSGRP00000077935	Catenin (cadherin-associated protein), alpha 2. (576 aa)
	ENSSGRP00000069704	annotation not available (68 aa)
	ENSSGRP00000069703	LOW QUALITY PROTEIN: vinculin-like. (1072 aa)
	ENSSGRP00000049665	Vinculin-like. (1099 aa)
	ENSSGRP00000044019	Vinculin b. (1088 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004794	ENSSGRP00000019399	ENSSGRP00000004794	ENSSGRP00000019399	LOW QUALITY PROTEIN: vinculin-like.	annotation not available	0.607
ENSSGRP00000004794	ENSSGRP00000077935	ENSSGRP00000004794	ENSSGRP00000077935	LOW QUALITY PROTEIN: vinculin-like.	Catenin (cadherin-associated protein), alpha 2.	0.607
ENSSGRP00000004794	ENSSGRP00000077979	ENSSGRP00000004794	ENSSGRP00000077979	LOW QUALITY PROTEIN: vinculin-like.	Catenin alpha-2-like.	0.959
ENSSGRP00000004794	ENSSGRP00000097096	ENSSGRP00000004794	ENSSGRP00000097096	LOW QUALITY PROTEIN: vinculin-like.	annotation not available	0.607
ENSSGRP00000004794	ENSSGRP00000103843	ENSSGRP00000004794	ENSSGRP00000103843	LOW QUALITY PROTEIN: vinculin-like.	Catenin alpha-1.	0.959
ENSSGRP00000004794	LOC107573466	ENSSGRP00000004794	ENSSGRP00000010636	LOW QUALITY PROTEIN: vinculin-like.	Catenin alpha-2-like.	0.959
ENSSGRP00000004794	ctnna2	ENSSGRP00000004794	ENSSGRP00000016400	LOW QUALITY PROTEIN: vinculin-like.	Catenin alpha-2.	0.959
ENSSGRP00000006060	ENSSGRP00000019399	ENSSGRP00000006060	ENSSGRP00000019399	annotation not available	annotation not available	0.607
ENSSGRP00000006060	ENSSGRP00000077935	ENSSGRP00000006060	ENSSGRP00000077935	annotation not available	Catenin (cadherin-associated protein), alpha 2.	0.607
ENSSGRP00000006060	ENSSGRP00000077979	ENSSGRP00000006060	ENSSGRP00000077979	annotation not available	Catenin alpha-2-like.	0.607
ENSSGRP00000006060	ENSSGRP00000097096	ENSSGRP00000006060	ENSSGRP00000097096	annotation not available	annotation not available	0.607
ENSSGRP00000006060	ENSSGRP00000103843	ENSSGRP00000006060	ENSSGRP00000103843	annotation not available	Catenin alpha-1.	0.607
ENSSGRP00000006060	LOC107573466	ENSSGRP00000006060	ENSSGRP00000010636	annotation not available	Catenin alpha-2-like.	0.607
ENSSGRP00000006060	ctnna2	ENSSGRP00000006060	ENSSGRP00000016400	annotation not available	Catenin alpha-2.	0.607
ENSSGRP00000019399	ENSSGRP00000004794	ENSSGRP00000019399	ENSSGRP00000004794	annotation not available	LOW QUALITY PROTEIN: vinculin-like.	0.607
ENSSGRP00000019399	ENSSGRP00000006060	ENSSGRP00000019399	ENSSGRP00000006060	annotation not available	annotation not available	0.607
ENSSGRP00000019399	ENSSGRP00000044019	ENSSGRP00000019399	ENSSGRP00000044019	annotation not available	Vinculin b.	0.607
ENSSGRP00000019399	ENSSGRP00000049665	ENSSGRP00000019399	ENSSGRP00000049665	annotation not available	Vinculin-like.	0.607
ENSSGRP00000019399	ENSSGRP00000069703	ENSSGRP00000019399	ENSSGRP00000069703	annotation not available	LOW QUALITY PROTEIN: vinculin-like.	0.607
ENSSGRP00000019399	ENSSGRP00000069704	ENSSGRP00000019399	ENSSGRP00000069704	annotation not available	annotation not available	0.607