STRINGSTRING
SMAC_03157 SMAC_03157 SMAC_04981 SMAC_04981 SMAC_03967 SMAC_03967 SMAC_04037 SMAC_04037 SMAC_06606 SMAC_06606 SMAC_12076 SMAC_12076
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_03157WGS project CABT00000000 data, contig 2.7. (503 aa)
SMAC_04981WGS project CABT00000000 data, contig 2.8; Belongs to the arginase family. (252 aa)
SMAC_03967WGS project CABT00000000 data, contig 2.17; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (485 aa)
SMAC_04037WGS project CABT00000000 data, contig 2.17; Belongs to the arginase family. (393 aa)
SMAC_06606WGS project CABT00000000 data, contig 2.37; Belongs to the spermidine/spermine synthase family. (291 aa)
SMAC_12076WGS project CABT00000000 data, contig 2.38. (304 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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