(15 nodes) 3-5 DNA helicase activity network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	H2Y2K5_CIOIN	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (549 aa)
	H2Y226_CIOIN	Uncharacterized protein. (112 aa)
	H2XVJ9_CIOIN	Helicase C-terminal domain-containing protein. (209 aa)
	F6PXA9_CIOIN	Uncharacterized protein. (804 aa)
	LOC100187076	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (622 aa)
	H2XPC0_CIOIN	Helicase ATP-binding domain-containing protein. (175 aa)
	H2XN42_CIOIN	Uncharacterized protein. (362 aa)
	F7AWL5_CIOIN	F-box domain-containing protein. (431 aa)
	F6UAB2_CIOIN	FANCM-MHF_bd domain-containing protein. (274 aa)
	F6XHT6_CIOIN	UvrD-like helicase C-terminal domain-containing protein. (212 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6QXW9_CIOIN	Helicase ATP-binding domain-containing protein. (273 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	LOC100179894	Werner syndrome ATP-dependent helicase homolog isoform X1. (1194 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PXA9_CIOIN	F6QXW9_CIOIN	ENSCINP00000013050	ENSCINP00000006094	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.575
F6PXA9_CIOIN	F6UAB2_CIOIN	ENSCINP00000013050	ENSCINP00000021425	Uncharacterized protein.	FANCM-MHF_bd domain-containing protein.	0.570
F6PXA9_CIOIN	H2XN42_CIOIN	ENSCINP00000013050	ENSCINP00000031075	Uncharacterized protein.	Uncharacterized protein.	0.575
F6QXW9_CIOIN	F6PXA9_CIOIN	ENSCINP00000006094	ENSCINP00000013050	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.575
F6QXW9_CIOIN	F6UAB2_CIOIN	ENSCINP00000006094	ENSCINP00000021425	Helicase ATP-binding domain-containing protein.	FANCM-MHF_bd domain-containing protein.	0.822
F6QXW9_CIOIN	F6XHT6_CIOIN	ENSCINP00000006094	ENSCINP00000019609	Helicase ATP-binding domain-containing protein.	UvrD-like helicase C-terminal domain-containing protein.	0.896
F6QXW9_CIOIN	F7AWL5_CIOIN	ENSCINP00000006094	ENSCINP00000023021	Helicase ATP-binding domain-containing protein.	F-box domain-containing protein.	0.896
F6QXW9_CIOIN	H2XN42_CIOIN	ENSCINP00000006094	ENSCINP00000031075	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.778
F6QXW9_CIOIN	LOC100179894	ENSCINP00000006094	ENSCINP00000004562	Helicase ATP-binding domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.997
F6QXW9_CIOIN	LOC100183594	ENSCINP00000006094	ENSCINP00000005835	Helicase ATP-binding domain-containing protein.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.760
F6UAB2_CIOIN	F6PXA9_CIOIN	ENSCINP00000021425	ENSCINP00000013050	FANCM-MHF_bd domain-containing protein.	Uncharacterized protein.	0.570
F6UAB2_CIOIN	F6QXW9_CIOIN	ENSCINP00000021425	ENSCINP00000006094	FANCM-MHF_bd domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.822
F6UAB2_CIOIN	F6XHT6_CIOIN	ENSCINP00000021425	ENSCINP00000019609	FANCM-MHF_bd domain-containing protein.	UvrD-like helicase C-terminal domain-containing protein.	0.896
F6UAB2_CIOIN	F7AWL5_CIOIN	ENSCINP00000021425	ENSCINP00000023021	FANCM-MHF_bd domain-containing protein.	F-box domain-containing protein.	0.896
F6UAB2_CIOIN	H2XN42_CIOIN	ENSCINP00000021425	ENSCINP00000031075	FANCM-MHF_bd domain-containing protein.	Uncharacterized protein.	0.778
F6UAB2_CIOIN	LOC100179894	ENSCINP00000021425	ENSCINP00000004562	FANCM-MHF_bd domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.997
F6UAB2_CIOIN	LOC100183594	ENSCINP00000021425	ENSCINP00000005835	FANCM-MHF_bd domain-containing protein.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.760
F6X3A4_CIOIN	F6X3C5_CIOIN	ENSCINP00000015974	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.944
F6X3A4_CIOIN	LOC100179894	ENSCINP00000015974	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.400
F6X3C5_CIOIN	F6X3A4_CIOIN	ENSCINP00000015971	ENSCINP00000015974	HA2 domain-containing protein.	Uncharacterized protein.	0.944