(60 nodes) DNA packaging complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6RL41_CIOIN	FAT domain-containing protein. (2944 aa)
	F6YTT5_CIOIN	H15 domain-containing protein. (186 aa)
	LOC100184966	Histone H2B-like; Belongs to the histone H2B family. (121 aa)
	zf(phd)-1	Uncharacterized protein. (667 aa)
	F6UK15_CIOIN	SWIB domain-containing protein. (435 aa)
	F7AHT0_CIOIN	Histone H3; Belongs to the histone H3 family. (136 aa)
	LOC100175748	SCD domain-containing protein. (980 aa)
	F6YSI2_CIOIN	Uncharacterized protein. (250 aa)
	F6Y9A9_CIOIN	Uncharacterized protein. (636 aa)
	F6U886_CIOIN	GLTSCR1 domain-containing protein. (211 aa)
	F7ADN1_CIOIN	Structural maintenance of chromosomes protein. (1253 aa)
	F6WUJ1_CIOIN	Structural maintenance of chromosomes protein. (1175 aa)
	F6SH99_CIOIN	SMC hinge domain-containing protein. (922 aa)
	F6U2A4_CIOIN	BAF250_C domain-containing protein. (629 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6QNL7_CIOIN	Uncharacterized protein. (1214 aa)
	LOC100185398	Actin-like protein 6B; Belongs to the actin family. (423 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	F6UGC2_CIOIN	Cnd1 domain-containing protein. (1182 aa)
	F6PU76_CIOIN	Enhancer of polycomb-like protein. (402 aa)
	F6UXY9_CIOIN	ARID domain-containing protein. (428 aa)
	LOC100175631	Histone H2A; Belongs to the histone H2A family. (141 aa)
	F6W213_CIOIN	Uncharacterized protein. (572 aa)
	F6WMT5_CIOIN	HSA domain-containing protein. (374 aa)
	LOC100177125	Histone H3.3-like. (147 aa)
	LOC100176733	Cnd3 domain-containing protein. (957 aa)
	F6Y7R5_CIOIN	Amine oxidase. (802 aa)
	F6YUQ8_CIOIN	MPN domain-containing protein. (457 aa)
	F6XT34_CIOIN	HMG box domain-containing protein. (405 aa)
	F7B7U2_CIOIN	Bromo domain-containing protein. (440 aa)
	F6VEQ7_CIOIN	RFX-type winged-helix domain-containing protein. (624 aa)
	F6QSH0_CIOIN	Uncharacterized protein. (709 aa)
	LOC100176076	Uncharacterized protein LOC100176076. (657 aa)
	LOC100180482	Structural maintenance of chromosomes protein. (1202 aa)
	H2Y3B8_CIOIN	Uncharacterized protein. (235 aa)
	F6PHE6_CIOIN	Uncharacterized protein. (387 aa)
	F6PHR7_CIOIN	Uncharacterized protein. (228 aa)
	LOC100180348	B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
	LOC100179759	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (820 aa)
	LOC100185658	Kinetochore protein NDC80 homolog. (596 aa)
	H2Y2Q0_CIOIN	FATC domain-containing protein; Belongs to the PI3/PI4-kinase family. (450 aa)
	H2Y1G6_CIOIN	SMC_N domain-containing protein. (190 aa)
	H2Y0L0_CIOIN	FAT domain-containing protein. (303 aa)
	zf(c2h2)-17	Zinc finger protein isoform X1. (399 aa)
	H2XVM9_CIOIN	Uncharacterized protein. (639 aa)
	H2XVF4_CIOIN	H15 domain-containing protein. (168 aa)
	H2XTK5_CIOIN	SMC_N domain-containing protein. (105 aa)
	H2XSB0_CIOIN	Uncharacterized protein. (578 aa)
	H2XS59_CIOIN	Cnd1_N domain-containing protein. (231 aa)
	H2XNP0_CIOIN	Uncharacterized protein. (243 aa)
	LOC100186757	Histone H3; Belongs to the histone H3 family. (136 aa)
	H2XJH5_CIOIN	ANK_REP_REGION domain-containing protein. (95 aa)
	F6ZEU6_CIOIN	Uncharacterized protein. (601 aa)
	Zf(phd)-26	PHD-type domain-containing protein. (257 aa)
	F6X4R3_CIOIN	CENP-T_C domain-containing protein. (177 aa)
	LOC100180856	Rad21_Rec8 domain-containing protein. (376 aa)
	F6VBZ6_CIOIN	Telo_bind domain-containing protein. (527 aa)
	LOC100183508	MRG/MORF4L-binding protein-like. (148 aa)
	tcfl1	Ci-TCFL1 protein. (333 aa)
	F6PWP3_CIOIN	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1233 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHE6_CIOIN	F6PHR7_CIOIN	ENSCINP00000018285	ENSCINP00000018266	Uncharacterized protein.	Uncharacterized protein.	0.483
F6PHE6_CIOIN	F6U2A4_CIOIN	ENSCINP00000018285	ENSCINP00000009518	Uncharacterized protein.	BAF250_C domain-containing protein.	0.982
F6PHE6_CIOIN	F6U886_CIOIN	ENSCINP00000018285	ENSCINP00000007469	Uncharacterized protein.	GLTSCR1 domain-containing protein.	0.695
F6PHE6_CIOIN	F6UK15_CIOIN	ENSCINP00000018285	ENSCINP00000003409	Uncharacterized protein.	SWIB domain-containing protein.	0.996
F6PHE6_CIOIN	F6UXY9_CIOIN	ENSCINP00000018285	ENSCINP00000021703	Uncharacterized protein.	ARID domain-containing protein.	0.860
F6PHE6_CIOIN	F6VEQ7_CIOIN	ENSCINP00000018285	ENSCINP00000013909	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.860
F6PHE6_CIOIN	F6W213_CIOIN	ENSCINP00000018285	ENSCINP00000018744	Uncharacterized protein.	Uncharacterized protein.	0.953
F6PHE6_CIOIN	F6WMT5_CIOIN	ENSCINP00000018285	ENSCINP00000018738	Uncharacterized protein.	HSA domain-containing protein.	0.953
F6PHE6_CIOIN	F6XT34_CIOIN	ENSCINP00000018285	ENSCINP00000015936	Uncharacterized protein.	HMG box domain-containing protein.	0.990
F6PHE6_CIOIN	F6Y9A9_CIOIN	ENSCINP00000018285	ENSCINP00000007355	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	F6YSI2_CIOIN	ENSCINP00000018285	ENSCINP00000007347	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	F7AHT0_CIOIN	ENSCINP00000018285	ENSCINP00000005615	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.659
F6PHE6_CIOIN	H2XVM9_CIOIN	ENSCINP00000018285	ENSCINP00000033713	Uncharacterized protein.	Uncharacterized protein.	0.999
F6PHE6_CIOIN	H2Y3B8_CIOIN	ENSCINP00000018285	ENSCINP00000036403	Uncharacterized protein.	Uncharacterized protein.	0.583
F6PHE6_CIOIN	LOC100175631	ENSCINP00000018285	ENSCINP00000020149	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.816
F6PHE6_CIOIN	LOC100177125	ENSCINP00000018285	ENSCINP00000024181	Uncharacterized protein.	Histone H3.3-like.	0.659
F6PHE6_CIOIN	LOC100180348	ENSCINP00000018285	ENSCINP00000017988	Uncharacterized protein.	B-cell CLL/lymphoma 7 protein family member B-like.	0.593
F6PHE6_CIOIN	LOC100184966	ENSCINP00000018285	ENSCINP00000002195	Uncharacterized protein.	Histone H2B-like; Belongs to the histone H2B family.	0.719
F6PHE6_CIOIN	LOC100185398	ENSCINP00000018285	ENSCINP00000010732	Uncharacterized protein.	Actin-like protein 6B; Belongs to the actin family.	0.996
F6PHE6_CIOIN	LOC100186757	ENSCINP00000018285	ENSCINP00000029998	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.659