(16 nodes) Positive regulation of transcription by RNA polymerase III network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6T377_CIOIN	Uncharacterized protein. (415 aa)
	LOC100176030	WD_REPEATS_REGION domain-containing protein. (1206 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	F6UFC1_CIOIN	Uncharacterized protein. (482 aa)
	H2XJF1_CIOIN	SF3b1 domain-containing protein. (898 aa)
	F6Z4B6_CIOIN	Uncharacterized protein. (758 aa)
	LOC100182742	Nucleolar RNA helicase 2. (672 aa)
	F7B658_CIOIN	TFIIB-type domain-containing protein. (658 aa)
	F6PLM3_CIOIN	Bromo domain-containing protein. (295 aa)
	F6R407_CIOIN	Uncharacterized protein. (1023 aa)
	H2XJP4_CIOIN	Uncharacterized protein. (368 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XPH2_CIOIN	DUF3385 domain-containing protein. (265 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PLM3_CIOIN	F6R407_CIOIN	ENSCINP00000009891	ENSCINP00000018013	Bromo domain-containing protein.	Uncharacterized protein.	0.648
F6PLM3_CIOIN	F6UFC1_CIOIN	ENSCINP00000009891	ENSCINP00000005215	Bromo domain-containing protein.	Uncharacterized protein.	0.505
F6PLM3_CIOIN	H2XJF1_CIOIN	ENSCINP00000009891	ENSCINP00000005223	Bromo domain-containing protein.	SF3b1 domain-containing protein.	0.505
F6PLM3_CIOIN	H2XJP4_CIOIN	ENSCINP00000009891	ENSCINP00000029876	Bromo domain-containing protein.	Uncharacterized protein.	0.628
F6PLM3_CIOIN	H2XM17_CIOIN	ENSCINP00000009891	ENSCINP00000030699	Bromo domain-containing protein.	FAT domain-containing protein.	0.542
F6PLM3_CIOIN	H2XXZ3_CIOIN	ENSCINP00000009891	ENSCINP00000034527	Bromo domain-containing protein.	Uncharacterized protein.	0.577
F6PLM3_CIOIN	H2Y066_CIOIN	ENSCINP00000009891	ENSCINP00000035300	Bromo domain-containing protein.	Uncharacterized protein.	0.542
F6PLM3_CIOIN	LOC100182742	ENSCINP00000009891	ENSCINP00000007210	Bromo domain-containing protein.	Nucleolar RNA helicase 2.	0.614
F6R407_CIOIN	F6PLM3_CIOIN	ENSCINP00000018013	ENSCINP00000009891	Uncharacterized protein.	Bromo domain-containing protein.	0.648
F6R407_CIOIN	F6UFC1_CIOIN	ENSCINP00000018013	ENSCINP00000005215	Uncharacterized protein.	Uncharacterized protein.	0.607
F6R407_CIOIN	F6Z4B6_CIOIN	ENSCINP00000018013	ENSCINP00000006999	Uncharacterized protein.	Uncharacterized protein.	0.648
F6R407_CIOIN	H2XJF1_CIOIN	ENSCINP00000018013	ENSCINP00000005223	Uncharacterized protein.	SF3b1 domain-containing protein.	0.607
F6R407_CIOIN	H2XJP4_CIOIN	ENSCINP00000018013	ENSCINP00000029876	Uncharacterized protein.	Uncharacterized protein.	0.748
F6R407_CIOIN	H2XXZ3_CIOIN	ENSCINP00000018013	ENSCINP00000034527	Uncharacterized protein.	Uncharacterized protein.	0.615
F6R407_CIOIN	LOC100182742	ENSCINP00000018013	ENSCINP00000007210	Uncharacterized protein.	Nucleolar RNA helicase 2.	0.765
F6UFC1_CIOIN	F6PLM3_CIOIN	ENSCINP00000005215	ENSCINP00000009891	Uncharacterized protein.	Bromo domain-containing protein.	0.505
F6UFC1_CIOIN	F6R407_CIOIN	ENSCINP00000005215	ENSCINP00000018013	Uncharacterized protein.	Uncharacterized protein.	0.607
F6UFC1_CIOIN	F6Z4B6_CIOIN	ENSCINP00000005215	ENSCINP00000006999	Uncharacterized protein.	Uncharacterized protein.	0.505
F6UFC1_CIOIN	H2XJF1_CIOIN	ENSCINP00000005215	ENSCINP00000005223	Uncharacterized protein.	SF3b1 domain-containing protein.	0.580
F6UFC1_CIOIN	H2XJP4_CIOIN	ENSCINP00000005215	ENSCINP00000029876	Uncharacterized protein.	Uncharacterized protein.	0.691